Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p63200 Brassica napus HOM05D008047 ORTHO05D009832 1.4e-46 189.1 89 100.0
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 4.2e-22 107.8 56 87.5
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 9.4e-22 106.7 56 85.7
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 9.4e-22 106.7 68 73.5
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 1.6e-21 105.9 56 83.9
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 2.1e-21 105.5 56 82.1
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 2.1e-21 105.5 56 82.1
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 2.1e-21 105.5 56 83.9
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 2.7e-21 105.1 56 83.9
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 4.7e-21 104.4 56 83.9
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 4.7e-21 104.4 56 83.9
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 4.7e-21 104.4 53 86.8
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 8.0e-21 103.6 56 80.4
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 2.3e-20 102.1 56 82.1
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 3.0e-20 101.7 53 81.1
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 2.8e-18 95.1 53 75.5
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 3.1e-17 91.7 56 69.6
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 7.7e-16 87.0 55 67.3
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 7.7e-16 87.0 56 66.1
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 1.0e-15 86.7 52 71.2
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 2.3e-15 85.5 55 65.5
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 2.9e-15 85.1 53 67.9
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 2.9e-15 85.1 53 67.9
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 5.0e-15 84.3 55 63.6
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 5.0e-15 84.3 55 63.6
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 5.0e-15 84.3 55 63.6
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 5.0e-15 84.3 55 63.6
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 5.0e-15 84.3 53 69.8
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 5.0e-15 84.3 55 65.5
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 5.0e-15 84.3 55 65.5
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 6.6e-15 84.0 60 61.7
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 1.5e-14 82.8 53 62.3
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 1.5e-14 82.8 55 61.8
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.5e-14 82.8 52 65.4
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 1.5e-14 82.8 55 63.6
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 1.5e-14 82.8 53 64.2
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 1.9e-14 82.4 52 65.4
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 2.5e-14 82.0 52 63.5
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 3.3e-14 81.6 52 61.5
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 5.5e-14 80.9 55 61.8
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 5.5e-14 80.9 52 65.4
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 7.2e-14 80.5 55 58.2
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 7.2e-14 80.5 55 63.6
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 9.5e-14 80.1 52 61.5
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 1.2e-13 79.7 52 59.6
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 1.2e-13 79.7 55 63.6
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 1.2e-13 79.7 55 61.8
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 1.6e-13 79.3 54 66.7
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 2.1e-13 79.0 68 51.5
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 2.1e-13 79.0 69 47.8
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 2.1e-13 79.0 55 63.6
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 3.6e-13 78.2 52 57.7
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 3.6e-13 78.2 53 64.2
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 3.6e-13 78.2 53 62.3
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 4.7e-13 77.8 52 59.6
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 6.1e-13 77.4 52 59.6
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 8.0e-13 77.0 55 54.5
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 8.0e-13 77.0 55 56.4
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 1.8e-12 75.9 52 59.6
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 2.3e-12 75.5 55 60.0
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.0e-12 74.7 55 54.5
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 4.0e-12 74.7 52 59.6
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 5.2e-12 74.3 52 57.7
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 5.2e-12 74.3 50 64.0
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 8.9e-12 73.6 52 53.8
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 8.9e-12 73.6 55 54.5
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 1.5e-11 72.8 52 57.7
Potri.013G131500 Populus trichocarpa HOM05D008047 ORTHO05D009832 2.0e-11 72.4 53 60.4
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 2.0e-11 72.4 50 58.0
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 2.6e-11 72.0 52 55.8
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 2.6e-11 72.0 52 55.8
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 1.3e-10 69.7 52 53.8
CSS0048801 Camellia sinensis var. sinensis HOM05D008047 ORTHO05D009832 2.8e-10 68.6 46 65.2
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 3.7e-10 68.2 52 50.0
PSO478G1745 Papaver somniferum HOM05D008047 ORTHO05D009832 4.9e-10 67.8 47 63.8
PSO017G1597 Papaver somniferum HOM05D008047 ORTHO05D009832 8.3e-10 67.0 47 61.7
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 8.3e-10 67.0 52 55.8
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 1.1e-09 66.6 49 55.1
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 1.1e-09 66.6 49 55.1
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 1.1e-09 66.6 52 55.8
CANSAT64G2909 Cannabis sativa HOM05D008047 ORTHO05D009832 4.1e-09 64.7 52 53.8
Sabra13G0111000 Salix brachista HOM05D008047 ORTHO05D009832 2.0e-08 62.4 50 56.0
Sopen01g045480 Solanum pennellii HOM05D008164 ORTHO05D010222 2.7e-08 62.0 40 62.5
Nitab4.5_0000460g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 1.0e-07 60.1 40 60.0
COL.COLO4_13397 Corchorus olitorius HOM05D008047 ORTHO05D009832 2.3e-07 58.9 34 73.5
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 2.3e-07 58.9 53 52.8
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 2.3e-07 58.9 53 52.8
PGR142G1223 Punica granatum HOM05D008047 ORTHO05D009832 6.6e-07 57.4 51 51.0
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 1.5e-06 56.2 49 53.1
SalBow3G4242 Salvia bowleyana HOM05D008047 ORTHO05D009832 5.6e-06 54.3 52 40.4


User provided reference genes

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