Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 2.3e-79 298.9 156 100.0
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 1.2e-77 293.1 156 98.1
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 3.8e-74 281.6 156 94.9
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 7.3e-70 267.3 148 94.6
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 5.4e-57 224.6 157 78.3
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 2.3e-55 219.2 134 86.6
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 2.5e-54 215.7 134 84.3
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 3.3e-54 215.3 141 81.6
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 1.4e-52 209.9 135 83.7
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 5.8e-51 204.5 134 80.6
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 1.6e-48 196.4 158 73.4
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 1.0e-42 177.2 141 72.3
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 1.3e-18 97.1 113 51.3
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 1.8e-15 86.7 131 44.3
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 8.8e-15 84.3 135 45.2
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 9.7e-14 80.9 132 40.2
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 1.7e-13 80.1 102 51.0
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 2.8e-13 79.3 122 42.6
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 1.1e-12 77.4 105 49.5
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 2.4e-12 76.3 118 46.6
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.4e-12 76.3 84 48.8
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 4.1e-12 75.5 101 46.5
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 4.1e-12 75.5 120 37.5
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 5.3e-12 75.1 90 46.7
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 5.3e-12 75.1 146 42.5
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 9.1e-12 74.3 125 40.0
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 1.2e-11 73.9 76 57.9
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.6e-11 73.6 101 48.5
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 2.0e-11 73.2 114 40.4
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 2.0e-11 73.2 86 47.7
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 3.5e-11 72.4 110 45.5
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 4.5e-11 72.0 109 43.1
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 4.5e-11 72.0 98 50.0
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 5.9e-11 71.6 76 55.3
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 7.7e-11 71.2 136 39.0
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 1.0e-10 70.9 99 44.4
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.0e-10 70.9 141 41.1
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.3e-10 70.5 132 44.7
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 1.3e-10 70.5 114 41.2
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 1.3e-10 70.5 108 41.7
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 1.7e-10 70.1 120 42.5
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.7e-10 70.1 103 43.7
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 3.8e-10 68.9 112 43.8
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 3.8e-10 68.9 97 45.4
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 5.0e-10 68.6 131 40.5
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 1.1e-09 67.4 98 46.9
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 1.1e-09 67.4 99 39.4
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 1.1e-09 67.4 113 41.6
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 1.9e-09 66.6 100 41.0
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 1.9e-09 66.6 95 42.1
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 2.5e-09 66.2 101 45.5
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.2e-09 65.9 87 49.4
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 4.2e-09 65.5 92 50.0
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 7.2e-09 64.7 98 46.9
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.2e-08 63.9 100 40.0
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.2e-08 63.9 100 40.0
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.2e-08 63.9 90 45.6
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 3.6e-08 62.4 100 43.0
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 3.6e-08 62.4 60 60.0
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 4.7e-08 62.0 63 55.6
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 4.7e-08 62.0 104 41.3
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.0e-08 61.2 125 38.4
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.0e-07 60.8 109 40.4
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.0e-07 60.8 125 38.4
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 1.0e-07 60.8 107 42.1
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 1.0e-07 60.8 118 38.1
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.4e-07 60.5 100 41.0
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.3e-07 59.7 90 48.9
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 2.3e-07 59.7 78 43.6
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.0e-07 59.3 104 41.3
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 3.0e-07 59.3 85 45.9
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 3.0e-07 59.3 55 52.7
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 4.0e-07 58.9 130 37.7
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 4.0e-07 58.9 80 47.5
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 4.0e-07 58.9 101 42.6
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 5.2e-07 58.5 101 38.6
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 5.2e-07 58.5 103 37.9
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 5.2e-07 58.5 60 56.7
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 6.7e-07 58.2 70 50.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.7e-07 58.2 62 53.2
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 8.8e-07 57.8 114 39.5
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.8e-07 57.8 126 34.9
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.5e-06 57.0 127 33.1
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 1.5e-06 57.0 98 42.9
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 2.0e-06 56.6 114 36.0
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 5.7e-06 55.1 85 41.2
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 7.5e-06 54.7 96 36.5


User provided reference genes

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