Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 5.9e-183 644.0 321 100.0
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 3.3e-181 638.3 321 99.1
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 9.5e-181 636.7 321 98.8
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 3.7e-177 624.8 328 96.6
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.2e-164 583.2 321 91.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.8e-164 582.0 321 91.6
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.8e-163 579.3 317 92.4
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 8.3e-161 570.5 321 90.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 7.8e-159 563.9 322 89.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 7.8e-159 563.9 322 88.2
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 3.9e-158 561.6 319 89.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 4.9e-153 544.7 323 84.8
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.2e-144 515.4 320 80.6
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 6.2e-140 501.1 319 80.9
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.1e-139 500.4 319 78.1
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 7.8e-135 484.2 321 74.5
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 6.2e-132 474.6 321 74.5
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.2e-130 470.3 321 75.1
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.4e-130 468.8 321 73.8
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 9.9e-130 467.2 324 71.9
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 9.9e-130 467.2 321 72.3
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 8.4e-129 464.2 319 73.0
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.1e-128 463.8 321 72.0
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-128 463.0 321 73.5
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-128 463.0 321 73.5
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.4e-128 462.6 321 73.8
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.4e-128 462.6 321 73.5
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.2e-128 462.2 322 72.7
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 5.4e-128 461.5 324 73.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 5.4e-128 461.5 322 71.4
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 71.5
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 2.1e-127 459.5 318 72.3
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.1e-127 459.5 319 71.8
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.7e-127 459.1 321 70.1
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.7e-127 459.1 319 73.4
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 3.5e-127 458.8 320 72.2
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 6.0e-127 458.0 321 71.0
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 7.9e-127 457.6 324 72.2
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.8e-126 456.4 318 71.7
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.8e-126 456.4 318 71.7
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.3e-126 456.1 321 72.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.3e-126 456.1 338 69.2
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 3.0e-126 455.7 323 70.9
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.0e-126 455.7 320 70.9
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 3.0e-126 455.7 318 72.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 3.9e-126 455.3 321 71.0
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 5.1e-126 454.9 320 71.2
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 5.1e-126 454.9 321 71.7
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 6.7e-126 454.5 321 71.7
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 8.7e-126 454.1 318 72.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.1e-125 453.8 322 71.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.1e-125 453.8 319 70.8
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.5e-125 453.4 321 71.7
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-125 453.4 324 71.6
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.5e-125 452.6 322 71.4
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.5e-125 452.6 318 71.1
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.3e-125 452.2 321 71.0
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 4.3e-125 451.8 319 70.5
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 5.6e-125 451.4 322 71.7
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 5.6e-125 451.4 321 71.3
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.4e-125 451.1 324 71.3
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 9.6e-125 450.7 321 72.0
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-124 450.3 318 70.8
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.6e-124 449.9 321 71.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.6e-124 449.9 321 69.8
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.1e-124 449.5 324 71.3
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.1e-124 449.5 321 70.7
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.7e-124 448.7 328 69.8
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.7e-124 448.7 319 70.5
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 3.7e-124 448.7 321 69.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 4.8e-124 448.4 321 71.3
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 4.8e-124 448.4 317 70.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.8e-124 448.4 321 71.0
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 6.2e-124 448.0 323 70.3
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 8.1e-124 447.6 321 70.7
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 8.1e-124 447.6 319 69.3
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.4e-123 446.0 321 69.2
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.1e-123 445.7 319 70.2
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 3.1e-123 445.7 316 72.2
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 4.0e-123 445.3 321 69.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 4.0e-123 445.3 320 70.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 6.9e-123 444.5 321 69.2
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 9.0e-123 444.1 321 71.3
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 4.5e-122 441.8 319 69.0
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 7.6e-122 441.0 321 69.5
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.9e-121 439.1 319 68.7
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 4.9e-121 438.3 321 69.8
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 8.4e-121 437.6 321 69.2
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.4e-120 436.8 318 68.2
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 2.5e-120 436.0 318 69.5
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 4.2e-120 435.3 318 69.5
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 9.3e-120 434.1 318 68.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 3.0e-118 429.1 318 68.6
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 2.5e-117 426.0 321 67.6
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.5e-117 426.0 339 64.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.3e-116 423.7 319 66.1
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.4e-115 419.5 308 68.5
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 9.0e-115 417.5 321 67.0
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 3.4e-114 415.6 291 72.2
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 4.5e-114 415.2 291 72.2
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.3e-113 413.7 319 66.5
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.7e-113 413.3 247 80.2
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.5e-112 408.3 259 76.8
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.3e-110 403.7 342 63.2
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.6e-108 396.7 331 61.6
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.2e-108 396.4 294 69.4
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.7e-108 395.6 332 62.7
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.2e-106 390.6 329 61.1
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.4e-106 389.0 271 72.7
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-102 377.1 318 61.9
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 5.3e-99 365.2 221 79.2
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.2e-98 364.0 332 58.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 5.9e-98 361.7 317 60.3
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.4e-96 357.1 317 56.8
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 9.4e-96 354.4 231 70.1
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 7.9e-95 351.3 313 59.4
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.4e-94 350.5 337 54.9
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.3e-94 349.7 306 60.8
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.9e-94 349.0 230 70.4
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.7e-92 342.4 321 59.2
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.9e-86 322.4 321 57.0
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.0e-82 310.1 204 74.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.8e-81 305.8 257 58.8
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 3.2e-80 302.8 222 67.6
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 3.2e-80 302.8 340 51.5
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.1e-75 287.7 246 67.5
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.6e-74 283.9 162 82.1
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 3.6e-71 272.7 268 54.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 3.6e-71 272.7 224 64.3
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 6.1e-71 271.9 315 47.3
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 3.8e-65 252.7 150 80.7
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 3.6e-63 246.1 361 43.5
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 4.0e-62 242.7 171 71.9
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.6e-61 240.0 150 75.3
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.0e-54 216.1 180 61.1
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.0e-54 216.1 133 75.9
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.2e-52 210.3 172 62.2
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 3.3e-48 196.4 131 74.8
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 8.0e-47 191.8 298 39.3
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-45 188.0 124 71.8
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-45 187.2 120 72.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-45 186.4 112 78.6
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-44 184.5 124 70.2
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-44 184.1 124 70.2
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.7e-44 183.0 115 73.9
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.4e-44 182.2 124 69.4
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.3e-44 181.8 120 71.7
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-43 180.6 120 71.7
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.1e-43 179.5 120 70.0
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.6e-42 176.0 118 69.5
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-38 163.3 307 39.4
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-37 161.0 93 82.8
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-36 157.5 166 55.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 2.4e-35 153.7 101 69.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 7.1e-35 152.1 101 68.3
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 7.8e-34 148.7 96 78.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 7.8e-34 148.7 96 78.1
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.4e-28 128.6 145 53.1
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-27 128.3 83 69.9
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 4.2e-27 126.3 97 63.9
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 1.4e-22 111.3 155 48.4
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.4e-20 102.1 64 78.1
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-19 100.9 64 78.1
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-18 97.4 74 68.9
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.6e-16 89.4 50 82.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 5.6e-16 89.4 50 82.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-15 87.8 50 80.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.6e-15 87.8 50 80.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.6e-15 86.7 47 80.9
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-14 85.1 105 50.5
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 1.4e-14 84.7 62 61.3
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-13 81.6 105 50.5
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 3.4e-13 80.1 231 27.3
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 9.9e-13 78.6 50 70.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-12 78.2 105 49.5
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.8e-12 76.6 116 46.6
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 3.9e-09 66.6 91 48.4
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.9e-09 66.6 91 45.1
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 1.5e-08 64.7 58 60.3


User provided reference genes

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