Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 9.2e-101 370.2 178 100.0
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.7e-94 349.4 198 88.4
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 1.7e-83 312.8 200 82.0
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 3.3e-82 308.5 200 81.0
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.9e-58 229.6 216 62.5
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 9.6e-58 227.3 217 60.4
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 9.3e-53 210.7 230 55.7
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 2.5e-50 202.6 219 58.4
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 2.8e-49 199.1 218 56.4
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 4.6e-44 181.8 183 60.7
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.0e-43 180.6 191 57.1
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.9e-43 178.7 198 55.6
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 8.7e-43 177.6 200 51.0
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.1e-42 177.2 183 59.0
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.3e-41 173.7 226 49.6
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 6.9e-40 167.9 178 55.1
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 6.9e-40 167.9 178 55.1
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 9.0e-40 167.5 201 51.2
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.2e-39 167.2 179 54.2
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.2e-39 167.2 179 54.2
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 2.0e-39 166.4 178 54.5
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 3.4e-39 165.6 216 50.5
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.0e-38 164.1 243 46.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.3e-38 163.7 206 52.9
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-37 160.6 180 51.1
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.2e-37 159.1 193 48.7
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.5e-36 155.6 200 48.0
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 5.7e-34 148.3 184 48.4
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 1.6e-33 146.7 115 70.4
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 1.6e-33 146.7 115 70.4
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.1e-32 144.1 192 46.9
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.4e-32 143.7 175 49.1
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 9.0e-32 141.0 185 48.6
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.2e-31 140.6 189 46.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 5.9e-31 138.3 179 49.7
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 1.3e-30 137.1 153 49.0
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 2.9e-30 136.0 187 46.0
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 8.5e-30 134.4 184 45.7
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 8.5e-30 134.4 186 45.7
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 1.1e-29 134.0 193 45.6
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.4e-29 133.7 175 46.3
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.9e-29 133.3 187 45.5
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 2.5e-29 132.9 186 43.5
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 3.2e-29 132.5 175 45.1
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 3.2e-29 132.5 179 48.0
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 4.2e-29 132.1 181 44.2
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 5.5e-29 131.7 147 51.0
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 5.5e-29 131.7 143 47.6
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 7.2e-29 131.3 177 45.8
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 7.2e-29 131.3 144 48.6
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.6e-28 130.2 177 45.2
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.6e-28 130.2 146 50.0
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 2.7e-28 129.4 188 45.2
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 3.6e-28 129.0 175 43.4
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.6e-28 129.0 147 50.3
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.1e-28 128.3 161 46.6
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 6.1e-28 128.3 182 44.5
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.0e-27 127.5 182 43.4
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.0e-27 127.5 182 43.4
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.0e-27 127.5 187 46.5
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 3.0e-27 125.9 185 43.8
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 8.8e-27 124.4 151 48.3
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 8.8e-27 124.4 164 44.5
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.5e-26 123.6 172 43.0
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.5e-26 123.6 172 43.0
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 1.9e-26 123.2 202 40.6
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 9.7e-26 120.9 148 44.6
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.3e-25 120.6 175 41.1
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 4.8e-25 118.6 143 49.0
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 6.3e-25 118.2 140 45.0
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 8.2e-25 117.9 158 45.6
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 1.4e-24 117.1 152 44.1
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.8e-24 116.7 177 41.2
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.8e-24 116.7 150 47.3
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.4e-24 116.3 177 39.0
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 2.4e-24 116.3 139 47.5
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 2.4e-24 116.3 158 44.9
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 4.1e-24 115.5 141 47.5
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 4.1e-24 115.5 141 42.6
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 5.3e-24 115.2 176 39.2
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 5.3e-24 115.2 157 45.2
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 5.3e-24 115.2 158 41.8
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 6.9e-24 114.8 174 40.2
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.2e-23 114.0 177 38.4
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 2.0e-23 113.2 197 38.6
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.6e-23 112.8 157 43.9
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.4e-23 112.5 195 37.9
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 4.5e-23 112.1 163 45.4
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 2.2e-22 109.8 199 39.7
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.8e-22 109.0 191 39.8
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 6.5e-22 108.2 140 45.0
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 6.5e-22 108.2 145 41.4
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 6.5e-22 108.2 215 38.6
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 8.5e-22 107.8 141 46.1
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 8.5e-22 107.8 182 37.9
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 2.5e-21 106.3 157 39.5
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 7.2e-21 104.8 146 39.7
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 9.4e-21 104.4 143 42.0
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 1.6e-20 103.6 226 37.2
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.7e-20 102.8 180 37.2
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 4.7e-20 102.1 182 36.8
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 4.7e-20 102.1 180 36.7
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 6.1e-20 101.7 165 40.6
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 3.0e-19 99.4 144 41.0
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 8.8e-19 97.8 153 38.6
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 1.1e-18 97.4 175 35.4
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 1.5e-18 97.1 154 39.0
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.6e-18 96.3 166 34.9
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 4.4e-18 95.5 188 36.2
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 4.4e-18 95.5 181 35.4
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 5.7e-18 95.1 143 40.6
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 9.7e-18 94.4 140 38.6
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 9.7e-18 94.4 127 42.5
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.7e-17 93.6 179 34.1
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.2e-17 93.2 180 33.9
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 4.8e-17 92.0 175 39.4
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 1.8e-16 90.1 141 39.7
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.2e-15 87.4 95 47.4
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.5e-15 87.0 137 38.0
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.7e-14 83.6 140 36.4
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.9e-14 82.8 141 37.6
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.6e-12 77.0 112 44.6
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.6e-12 77.0 125 39.2
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.6e-12 77.0 176 33.0
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 3.6e-12 75.9 150 37.3
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 6.1e-12 75.1 128 36.7
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 5.2e-11 72.0 137 32.8
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 8.8e-11 71.2 87 46.0
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.5e-10 70.5 90 40.0
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.5e-10 70.5 131 36.6
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 2.0e-10 70.1 35 91.4
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 9.7e-10 67.8 101 45.5
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.3e-09 67.4 146 34.2
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 1.4e-08 63.9 35 82.9
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 1.4e-08 63.9 35 82.9
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.4e-08 63.9 141 32.6
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 2.2e-06 56.6 158 25.9
Zm00001eb158870 Zea mays HOM05D005169 ORTHO05D006436 5.0e-06 55.5 140 31.4


User provided reference genes

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