Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.9e-78 295.8 151 100.0
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 2.6e-48 195.7 113 89.4
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 7.6e-48 194.1 113 88.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.3e-47 193.4 113 88.5
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 3.8e-47 191.8 113 87.6
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.1e-46 190.3 113 86.7
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.4e-46 189.9 113 86.7
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.4e-46 189.9 113 85.0
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.1e-46 187.6 113 86.7
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.1e-46 187.6 113 86.7
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.0e-44 183.7 113 83.2
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.0e-44 183.7 113 83.2
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.3e-44 183.3 115 84.3
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.3e-44 183.3 115 84.3
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 2.3e-44 182.6 119 81.5
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 3.0e-44 182.2 113 84.1
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 3.0e-44 182.2 115 83.5
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 5.1e-44 181.4 114 85.1
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 5.1e-44 181.4 114 85.1
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 3.8e-39 165.2 113 77.0
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-36 156.8 104 80.8
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 3.0e-36 155.6 120 70.8
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 5.1e-36 154.8 105 77.1
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 6.7e-36 154.5 112 71.4
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.1e-35 153.7 115 71.3
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.5e-35 152.5 115 70.4
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.3e-35 152.1 112 70.5
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 4.3e-35 151.8 116 71.6
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.3e-35 151.8 113 69.0
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 5.7e-35 151.4 114 69.3
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 5.7e-35 151.4 115 70.4
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 5.7e-35 151.4 115 70.4
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 9.7e-35 150.6 115 69.6
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.3e-34 150.2 115 69.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.3e-34 150.2 115 68.7
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.6e-34 149.8 113 67.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.2e-34 149.4 110 72.7
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.8e-34 149.1 115 67.8
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 4.8e-34 148.3 113 68.1
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 4.8e-34 148.3 115 66.1
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 6.3e-34 147.9 105 76.2
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 6.3e-34 147.9 115 68.7
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 6.3e-34 147.9 114 68.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 6.3e-34 147.9 112 71.4
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 8.2e-34 147.5 115 66.1
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 8.2e-34 147.5 115 66.1
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 8.2e-34 147.5 118 65.3
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.1e-33 147.1 114 68.4
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.4e-33 146.7 110 71.8
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 2.4e-33 146.0 118 64.4
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 3.1e-33 145.6 115 67.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 3.1e-33 145.6 115 67.8
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 5.3e-33 144.8 116 67.2
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 5.3e-33 144.8 113 65.5
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 6.9e-33 144.4 115 67.8
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 6.9e-33 144.4 107 72.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 9.1e-33 144.1 112 68.8
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 9.1e-33 144.1 117 67.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.2e-32 143.7 106 71.7
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.5e-32 143.3 117 69.2
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.5e-32 143.3 115 67.0
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.4e-32 142.1 113 66.4
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.9e-32 141.4 116 64.7
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 5.9e-32 141.4 115 66.1
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 5.9e-32 141.4 106 70.8
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.3e-31 140.2 113 65.5
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.3e-31 140.2 114 65.8
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.7e-31 139.8 113 64.6
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.2e-31 139.4 114 64.9
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.9e-31 139.0 114 64.0
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.8e-31 138.7 114 64.0
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.8e-31 138.7 114 64.0
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 5.0e-31 138.3 108 73.1
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 5.0e-31 138.3 117 64.1
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 6.5e-31 137.9 115 65.2
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 8.5e-31 137.5 114 63.2
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 8.5e-31 137.5 107 70.1
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.5e-30 136.0 116 62.9
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.2e-30 135.6 112 66.1
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.5e-30 134.8 128 61.7
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 9.4e-30 134.0 118 61.9
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 9.4e-30 134.0 113 65.5
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 9.4e-30 134.0 113 65.5
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 2.1e-29 132.9 110 65.5
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 3.6e-29 132.1 95 71.6
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 4.6e-29 131.7 114 62.3
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.1e-29 131.3 108 65.7
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 6.1e-29 131.3 118 63.6
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.0e-28 130.6 120 60.0
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.4e-28 130.2 113 62.8
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.4e-28 130.2 113 62.8
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 1.4e-28 130.2 109 66.1
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.8e-28 129.8 110 62.7
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.3e-28 129.4 114 59.6
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 3.0e-28 129.0 107 65.4
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.1e-27 127.1 116 60.3
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.5e-27 126.7 113 61.9
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.0e-27 126.3 112 65.2
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.0e-27 126.3 112 65.2
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 5.7e-27 124.8 98 69.4
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 6.3e-26 121.3 117 59.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 5.3e-25 118.2 118 60.2
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 5.9e-24 114.8 98 65.3
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 2.2e-23 112.8 117 54.7
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 6.5e-23 111.3 78 75.6
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.1e-21 104.8 103 57.3
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 3.0e-20 102.4 92 57.6
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.6e-19 99.4 116 53.4
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.3e-19 99.0 117 48.7
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.7e-19 98.2 101 55.4
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.8e-18 95.9 97 55.7
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.4e-17 93.6 62 75.8
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 9.1e-17 90.9 107 49.5
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 3.2e-14 82.4 106 44.3
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.2e-13 80.5 100 45.0
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 2.7e-08 62.8 46 71.7
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.9e-06 56.6 99 40.4


User provided reference genes

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