Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 5.8e-220 767.3 399 100.0
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 5.8e-220 767.3 399 100.0
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-142 510.0 427 70.5
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.9e-130 469.9 442 62.9
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 8.8e-128 461.1 470 59.8
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 9.8e-127 457.6 470 59.4
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-126 456.8 471 59.2
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 1.7e-126 456.8 471 59.2
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.8e-126 456.1 470 58.9
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 4.9e-126 455.3 471 59.0
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 8.3e-126 454.5 450 61.3
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.1e-125 454.1 471 59.0
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.1e-125 454.1 471 59.0
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 9.5e-122 441.0 470 58.1
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 6.1e-121 438.3 465 57.8
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 8.6e-115 417.9 473 54.3
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 9.5e-114 414.5 470 55.3
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 5.2e-104 382.1 514 51.4
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 9.5e-98 361.3 465 50.8
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 1.5e-90 337.4 471 46.5
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 3.3e-90 336.3 443 48.5
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 3.1e-88 329.7 470 46.6
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 1.3e-86 324.3 446 47.3
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 1.4e-85 320.9 446 47.5
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.4e-85 320.1 471 46.7
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 2.4e-85 320.1 443 46.3
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 3.2e-85 319.7 410 51.2
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 3.2e-85 319.7 469 44.6
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 3.2e-85 319.7 445 47.9
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.2e-85 319.7 444 46.4
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 4.2e-85 319.3 448 47.8
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.6e-84 317.4 470 44.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.5e-84 316.2 440 47.5
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 1.3e-83 314.3 454 45.4
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 5.1e-83 312.4 444 44.8
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 6.6e-83 312.0 447 47.2
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 5.6e-82 308.9 462 44.6
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 7.3e-82 308.5 462 44.6
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 1.6e-81 307.4 465 43.4
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.8e-81 306.6 447 46.8
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 4.8e-81 305.8 489 41.7
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 8.1e-81 305.1 444 45.5
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 1.1e-80 304.7 430 45.1
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.8e-80 303.9 483 42.2
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 2.4e-80 303.5 446 45.3
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 4.0e-80 302.8 468 43.6
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 4.0e-80 302.8 442 45.0
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 5.3e-80 302.4 444 46.6
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.5e-79 300.8 412 48.5
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 3.8e-78 296.2 475 44.0
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.8e-78 296.2 449 43.7
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 8.4e-78 295.0 475 41.1
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 8.4e-78 295.0 445 44.5
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 1.9e-77 293.9 408 47.8
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 1.9e-77 293.9 471 43.1
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.2e-77 293.1 449 43.4
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 3.2e-77 293.1 449 43.4
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 9.3e-77 291.6 467 41.8
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 3.5e-76 289.7 470 42.3
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 7.9e-76 288.5 481 41.6
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 7.9e-76 288.5 447 43.4
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 7.9e-76 288.5 414 45.9
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 7.9e-76 288.5 448 43.5
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 1.5e-74 284.3 414 45.2
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.5e-74 283.5 407 46.4
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.3e-74 282.7 408 46.8
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 4.3e-74 282.7 456 41.2
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 5.6e-74 282.3 471 42.3
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 4.8e-73 279.3 478 40.8
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 4.8e-73 279.3 400 46.5
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 6.2e-73 278.9 444 43.2
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 8.1e-73 278.5 450 43.3
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 1.4e-72 277.7 455 43.3
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.0e-72 276.2 432 44.4
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 4.0e-72 276.2 401 47.1
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 4.0e-72 276.2 469 41.2
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 6.9e-72 275.4 440 43.4
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.2e-71 274.6 450 42.4
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 2.0e-71 273.9 408 46.6
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 4.5e-71 272.7 406 44.6
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 4.5e-71 272.7 444 42.8
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.8e-71 272.3 469 40.9
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 9.9e-71 271.6 470 40.6
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.7e-70 270.8 445 42.2
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.9e-70 270.0 442 43.2
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 4.9e-70 269.2 445 43.1
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 3.2e-69 266.5 449 41.4
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.6e-68 264.2 408 43.1
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 2.1e-68 263.8 409 44.3
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 4.6e-68 262.7 408 44.9
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.3e-67 260.4 444 39.0
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.9e-67 259.6 450 40.9
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 3.9e-67 259.6 450 40.9
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 2.5e-66 256.9 469 39.9
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.6e-65 254.2 445 40.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 5.3e-64 249.2 383 43.3
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 7.1e-61 238.8 204 60.3
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 9.3e-61 238.4 381 42.5
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 2.7e-60 236.9 447 39.4
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 7.9e-60 235.3 286 49.3
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.8e-59 234.2 296 52.0
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 6.7e-59 232.3 294 49.3
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.5e-58 231.1 454 37.9
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.9e-50 204.1 457 36.8
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 5.7e-50 202.6 457 36.8
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 2.2e-49 200.7 373 40.2
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 1.1e-48 198.4 155 70.3
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.0e-47 194.1 170 60.6
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 4.5e-47 193.0 163 63.8
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 7.7e-47 192.2 151 67.5
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.7e-46 191.0 154 66.9
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.2e-44 184.9 287 41.5
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 4.6e-44 183.0 168 59.5
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 1.8e-43 181.0 374 38.8
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 6.7e-43 179.1 155 65.2
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.0e-42 177.6 278 42.1
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.3e-42 176.4 153 64.7
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 4.8e-41 172.9 100 88.0
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.4e-40 171.4 325 37.5
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 3.1e-40 170.2 154 58.4
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 1.5e-39 167.9 149 58.4
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.3e-38 164.9 133 66.9
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 3.7e-33 146.7 279 36.6
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-29 134.8 137 59.1
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 5.5e-29 132.9 616 26.1
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 6.1e-28 129.4 278 36.7
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 2.3e-27 127.5 318 33.0
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 3.0e-27 127.1 80 77.5
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 3.0e-27 127.1 138 52.2
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 2.6e-26 124.0 278 34.5
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 3.3e-26 123.6 302 33.4
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 4.4e-26 123.2 302 33.1
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.7e-25 121.3 123 52.8
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 2.8e-25 120.6 236 33.5
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.8e-24 117.9 274 33.2
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.6e-23 114.8 280 34.3
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.5e-23 113.2 316 32.0
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 7.7e-23 112.5 287 32.1
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 1.0e-22 112.1 280 32.9
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 2.9e-22 110.5 239 35.6
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 6.5e-22 109.4 238 34.5
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 6.5e-22 109.4 162 41.4
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 1.1e-21 108.6 279 32.6
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.6e-20 104.8 280 31.4
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.7e-20 104.0 104 52.9
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.0e-19 102.1 97 58.8
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 3.7e-17 93.6 279 29.7
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.1e-16 92.0 52 88.5
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 9.1e-16 89.0 126 47.6
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 2.0e-15 87.8 281 30.6
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 1.2e-12 78.6 105 46.7
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 8.0e-12 75.9 49 79.6
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 6.8e-11 72.8 38 92.1
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 2.0e-10 71.2 210 28.1
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 4.9e-09 66.6 73 53.4
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.4e-08 65.1 69 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 2.4e-08 64.3 146 32.2
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 3.1e-08 63.9 44 75.0
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.1e-08 63.9 52 61.5
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 5.4e-08 63.2 186 29.6
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 2.7e-07 60.8 50 62.0
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.3e-06 57.8 42 73.8


User provided reference genes

Program Settings