Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.8e-58 228.4 116 100.0
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 9.0e-49 196.8 114 86.0
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 3.8e-47 191.4 117 83.8
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 5.0e-47 191.0 112 84.8
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 5.0e-47 191.0 117 83.8
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.1e-46 189.9 114 84.2
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 4.2e-46 188.0 114 83.3
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 9.7e-43 176.8 113 77.9
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.7e-39 166.0 117 75.2
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 6.1e-37 157.5 102 81.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.0e-36 156.8 117 70.1
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 3.0e-36 155.2 120 65.8
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 6.7e-36 154.1 100 79.0
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 4.8e-34 147.9 98 79.6
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.4e-33 146.4 104 74.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.0e-31 140.2 103 73.8
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.3e-31 139.8 69 100.0
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 6.5e-31 137.5 69 98.6
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 6.1e-29 131.0 76 86.8
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 7.0e-25 117.5 124 50.8
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.6e-24 116.3 124 50.0
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 2.6e-24 115.5 106 54.7
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 3.5e-24 115.2 122 51.6
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 4.5e-24 114.8 115 50.4
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 5.9e-24 114.4 118 52.5
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.7e-23 112.8 115 50.4
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.2e-23 112.5 74 70.3
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.2e-23 112.5 124 48.4
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 3.8e-23 111.7 117 47.9
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 3.8e-23 111.7 121 51.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 3.8e-23 111.7 121 51.2
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 5.0e-23 111.3 123 47.2
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.0e-23 111.3 114 50.9
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 6.5e-23 110.9 123 49.6
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.5e-23 110.9 114 50.9
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.5e-23 110.9 114 50.9
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.5e-23 110.9 114 50.9
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.5e-23 110.9 114 50.9
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 8.5e-23 110.5 130 49.2
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-22 109.8 114 50.9
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-22 109.4 114 50.0
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-22 109.4 114 50.0
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.9e-22 109.4 121 50.4
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 3.2e-22 108.6 109 54.1
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.2e-22 108.6 107 51.4
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 4.2e-22 108.2 116 49.1
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.2e-22 108.2 114 50.0
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 5.5e-22 107.8 125 44.8
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 5.5e-22 107.8 113 50.4
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 5.5e-22 107.8 124 46.8
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.5e-22 107.8 114 50.0
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 7.2e-22 107.5 99 55.6
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 9.4e-22 107.1 112 50.0
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.2e-21 106.7 94 55.3
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.1e-21 105.9 128 46.1
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 2.1e-21 105.9 120 48.3
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.1e-21 105.9 120 48.3
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 2.7e-21 105.5 128 46.9
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 3.6e-21 105.1 120 48.3
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.7e-21 104.8 125 47.2
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.7e-21 104.8 122 45.9
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 4.7e-21 104.8 116 44.8
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 6.1e-21 104.4 107 52.3
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 6.1e-21 104.4 123 45.5
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 6.1e-21 104.4 120 45.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.0e-21 104.0 121 47.9
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 8.0e-21 104.0 124 46.0
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.4e-20 103.2 114 46.5
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.4e-20 103.2 138 44.2
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.3e-20 102.4 114 50.0
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.3e-20 102.4 114 50.0
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 2.3e-20 102.4 112 48.2
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 2.3e-20 102.4 118 48.3
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 3.0e-20 102.1 111 46.8
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 4.0e-20 101.7 112 46.4
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 5.2e-20 101.3 121 45.5
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 5.2e-20 101.3 120 45.8
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 6.8e-20 100.9 112 48.2
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.8e-20 100.9 114 49.1
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 6.8e-20 100.9 118 43.2
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 6.8e-20 100.9 149 41.6
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 8.8e-20 100.5 112 49.1
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 8.8e-20 100.5 112 49.1
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 8.8e-20 100.5 114 45.6
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.2e-19 100.1 123 43.1
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.5e-19 99.8 114 49.1
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.0e-19 99.4 111 48.6
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 2.6e-19 99.0 120 45.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 3.4e-19 98.6 113 44.2
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 9.7e-19 97.1 124 46.0
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 9.7e-19 97.1 107 45.8
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.2e-18 95.9 112 46.4
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 2.8e-18 95.5 107 49.5
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.8e-18 95.5 119 46.2
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.8e-18 94.7 109 45.9
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 6.3e-18 94.4 112 42.9
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 6.3e-18 94.4 110 42.7
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 8.3e-18 94.0 117 47.9
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 1.4e-17 93.2 114 43.0
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.4e-17 92.4 143 39.2
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 2.4e-17 92.4 113 43.4
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 3.1e-17 92.0 118 41.5
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-17 91.7 101 47.5
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.2e-16 90.1 115 47.0
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.7e-16 89.0 133 42.9
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.0e-15 87.0 113 42.5
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 2.9e-15 85.5 89 50.6
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.5e-14 83.2 63 60.3
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 2.5e-14 82.4 120 38.3
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 7.2e-14 80.9 65 55.4
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 2.7e-13 79.0 93 47.3
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 3.6e-13 78.6 121 38.8
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 6.1e-13 77.8 116 37.1
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-12 76.6 62 59.7
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 2.3e-12 75.9 106 39.6
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 4.0e-12 75.1 70 51.4
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 5.2e-12 74.7 101 37.6
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 5.2e-12 74.7 86 45.3
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.5e-11 73.2 116 37.1
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 5.7e-11 71.2 110 39.1
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 9.8e-11 70.5 85 43.5
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.8e-10 68.2 81 45.7
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.4e-09 66.6 83 47.0
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.4e-09 66.6 46 65.2
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 4.1e-09 65.1 114 32.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-07 60.1 81 43.2
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.7e-07 59.7 45 64.4
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.3e-07 59.3 45 64.4
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.8e-07 58.5 49 55.1
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 8.6e-07 57.4 44 65.9
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 8.6e-07 57.4 74 43.2


User provided reference genes

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