Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.6e-116 422.9 235 100.0
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.3e-115 419.9 235 99.6
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 9.3e-101 370.5 235 90.2
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.2e-95 353.6 229 89.5
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.2e-95 353.6 229 89.5
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 5.5e-85 318.2 244 80.3
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.5e-82 309.3 226 79.6
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.1e-77 293.9 233 74.7
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 3.2e-77 292.4 235 75.3
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.3e-75 287.0 233 74.7
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 9.6e-74 280.8 236 74.2
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.6e-73 280.0 252 69.8
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.4e-72 276.9 235 71.5
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 9.0e-72 274.2 236 73.3
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 7.2e-69 264.6 233 69.1
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.2e-68 263.8 235 69.4
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-68 263.5 237 71.3
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.6e-68 263.5 237 71.3
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.6e-68 263.5 237 71.3
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.1e-64 250.8 234 67.9
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 3.4e-63 245.7 238 69.3
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 5.3e-56 221.9 223 61.4
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 3.8e-54 215.7 233 60.1
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.5e-50 203.8 228 59.6
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 5.9e-47 191.8 179 61.5
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 7.7e-47 191.4 188 59.0
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.2e-44 184.1 180 60.0
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.2e-44 184.1 187 58.3
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.7e-44 183.0 210 53.8
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 3.6e-44 182.6 203 55.2
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.6e-44 182.6 192 57.3
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.0e-43 181.0 195 56.9
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 3.0e-43 179.5 185 57.8
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 8.8e-43 177.9 189 57.1
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.1e-42 177.6 201 54.2
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 2.6e-42 176.4 182 59.3
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 3.3e-42 176.0 192 58.3
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 4.4e-42 175.6 188 56.4
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 4.4e-42 175.6 180 56.7
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.4e-42 175.6 180 60.0
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 7.5e-42 174.9 178 60.1
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 3.7e-41 172.6 180 57.8
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.3e-41 171.8 193 52.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.2e-41 171.4 219 49.8
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 8.2e-41 171.4 199 53.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 8.2e-41 171.4 215 52.1
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 8.2e-41 171.4 212 53.3
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.1e-40 171.0 189 54.5
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.4e-40 170.6 194 55.7
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 7.0e-40 168.3 191 55.5
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 7.0e-40 168.3 199 51.8
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 9.1e-40 167.9 178 54.5
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.2e-39 167.5 212 50.9
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.2e-39 167.5 211 50.2
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.2e-39 167.5 185 53.5
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 1.2e-39 167.5 220 51.4
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 2.0e-39 166.8 196 52.6
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.0e-39 166.8 178 53.9
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 4.5e-39 165.6 212 51.9
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 5.9e-39 165.2 166 59.0
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 7.7e-39 164.9 142 64.8
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 7.7e-39 164.9 187 54.5
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 7.7e-39 164.9 210 47.1
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.3e-38 164.1 214 48.6
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.3e-38 164.1 213 49.3
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.7e-38 163.7 160 60.0
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.9e-38 162.9 168 56.0
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 3.8e-38 162.5 173 53.2
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 3.8e-38 162.5 186 51.6
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 5.0e-38 162.2 187 52.9
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 5.0e-38 162.2 211 49.3
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.1e-37 161.0 194 50.0
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 2.5e-37 159.8 197 52.8
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.2e-37 159.1 214 46.7
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 5.5e-37 158.7 173 53.2
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 5.5e-37 158.7 216 47.7
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 9.4e-37 157.9 194 52.1
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 1.2e-36 157.5 172 54.7
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.6e-36 157.1 172 54.7
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 2.1e-36 156.8 178 53.4
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.4e-35 154.1 211 50.2
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.8e-35 153.7 165 65.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 3.0e-35 152.9 208 48.6
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 3.0e-35 152.9 220 45.5
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 6.8e-35 151.8 154 61.7
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 6.8e-35 151.8 216 46.8
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-34 151.0 179 53.1
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.5e-34 150.6 218 45.9
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.6e-34 149.8 189 49.2
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 3.4e-34 149.4 170 54.7
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 7.5e-34 148.3 184 48.4
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 9.8e-34 147.9 184 48.9
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 9.8e-34 147.9 169 53.3
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.3e-33 147.5 178 52.2
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.2e-33 146.7 123 76.4
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 2.8e-33 146.4 175 51.4
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 2.8e-33 146.4 167 53.3
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 2.8e-33 146.4 181 48.1
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 8.3e-33 144.8 117 65.0
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 8.3e-33 144.8 171 52.6
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.1e-32 144.4 210 46.2
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.1e-32 144.4 201 47.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.8e-32 143.7 191 48.7
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.4e-32 143.3 229 41.9
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 5.4e-32 142.1 167 54.5
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.2e-31 141.0 180 50.6
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 7.7e-31 138.3 174 48.9
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.0e-30 137.9 179 52.0
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.7e-30 137.1 166 50.0
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 3.8e-30 136.0 174 48.9
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 5.0e-30 135.6 184 45.1
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 8.5e-30 134.8 181 43.6
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 8.5e-30 134.8 149 56.4
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.1e-29 134.4 196 49.5
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.5e-29 134.0 191 44.5
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 3.2e-29 132.9 166 60.8
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 3.2e-29 132.9 156 53.2
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 5.5e-29 132.1 194 44.3
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.2e-28 131.0 185 44.3
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 2.7e-28 129.8 175 46.9
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 4.7e-28 129.0 171 50.9
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 1.4e-27 127.5 187 47.6
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.2e-26 124.4 195 45.6
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 7.5e-26 121.7 173 46.8
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 7.5e-26 121.7 190 46.3
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.3e-25 120.9 105 69.5
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 4.9e-25 119.0 149 52.3
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 6.3e-25 118.6 190 42.6
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.7e-22 110.5 133 51.1
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.3e-22 110.2 94 76.6
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 5.0e-22 109.0 117 58.1
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 8.0e-20 101.7 129 48.8
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 1.8e-19 100.5 116 54.3
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 6.8e-19 98.6 180 38.3
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 2.6e-18 96.7 180 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.1e-16 91.3 145 37.9
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 2.5e-13 80.1 73 60.3
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 5.6e-13 79.0 229 32.8
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 9.5e-13 78.2 206 32.0
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.2e-12 77.8 105 48.6
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 2.1e-12 77.0 110 45.5
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.8e-12 76.6 73 52.1
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 2.8e-12 76.6 81 59.3
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 4.0e-11 72.8 85 47.1
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.3e-09 67.8 183 30.6
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 3.7e-09 66.2 99 40.4
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.5e-07 59.7 103 38.8


User provided reference genes

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