Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.5e-68 261.5 134 100.0
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.6e-57 224.9 115 100.0
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 4.0e-56 221.5 115 99.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-55 218.4 115 96.5
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 3.4e-55 218.4 115 96.5
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.6e-41 171.8 115 80.9
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.0e-36 156.0 115 75.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.3e-34 148.3 115 70.4
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.3e-32 142.5 115 70.4
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.5e-31 139.8 116 68.1
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 5.8e-31 137.9 116 66.4
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 8.6e-27 124.0 115 60.9
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 5.8e-23 111.3 118 54.2
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 4.9e-22 108.2 119 55.5
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.1e-21 107.1 119 54.6
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.4e-21 106.7 122 50.0
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.4e-21 106.7 119 55.5
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 7.1e-21 104.4 118 50.8
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 9.2e-21 104.0 118 55.1
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-20 103.6 119 47.1
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-20 103.6 119 47.1
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.6e-20 103.2 130 43.8
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-20 102.8 118 52.5
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 2.7e-20 102.4 118 50.8
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 2.7e-20 102.4 118 50.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 2.7e-20 102.4 119 46.2
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.5e-20 102.1 116 54.3
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-19 100.5 118 50.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-19 100.1 118 50.0
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-19 100.1 120 46.7
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-19 99.8 121 47.1
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 5.1e-19 98.2 115 51.3
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.2e-17 93.6 118 44.9
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.2e-17 93.6 123 45.5
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.1e-17 92.8 118 45.8
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.1e-17 92.8 123 43.1
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.6e-17 92.0 122 44.3
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-17 91.7 127 37.8
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-17 91.7 127 37.8
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-17 91.7 127 37.8
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.7e-17 91.7 127 37.8
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.1e-16 90.5 120 42.5
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.8e-16 89.7 118 42.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.8e-16 89.7 120 43.3
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.3e-16 89.4 122 41.8
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.3e-16 89.4 118 44.1
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 4.0e-16 88.6 121 45.5
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.0e-16 88.6 128 39.8
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.2e-16 88.2 119 42.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.2e-16 88.2 117 45.3
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.8e-16 87.8 126 42.1
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 6.8e-16 87.8 124 42.7
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.2e-15 87.0 119 44.5
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.2e-15 87.0 75 53.3
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.2e-15 87.0 123 42.3
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.5e-15 86.7 79 51.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.0e-15 86.3 117 44.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.6e-15 85.9 120 42.5
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.6e-15 85.9 124 42.7
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.4e-15 85.5 122 43.4
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 3.4e-15 85.5 121 39.7
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.4e-15 85.5 121 44.6
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.4e-15 85.1 117 42.7
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.4e-15 85.1 115 42.6
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.8e-15 84.7 115 42.6
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.8e-15 84.7 77 50.6
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.6e-15 84.3 78 50.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.6e-15 84.3 119 42.0
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.6e-15 84.3 118 42.4
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.6e-15 84.3 118 42.4
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 7.6e-15 84.3 120 41.7
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.6e-15 84.3 77 50.6
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 7.6e-15 84.3 120 43.3
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 7.6e-15 84.3 121 38.8
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-14 83.6 117 42.7
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.2e-14 82.8 118 42.4
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.9e-14 82.4 118 44.1
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.9e-14 82.4 84 47.6
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 3.7e-14 82.0 115 40.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 3.7e-14 82.0 78 52.6
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.9e-14 81.6 127 44.1
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 4.9e-14 81.6 125 41.6
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.4e-14 81.3 120 44.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 6.4e-14 81.3 84 48.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 8.4e-14 80.9 115 41.7
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-13 80.5 116 40.5
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.1e-13 80.5 120 42.5
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.4e-13 80.1 123 40.7
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.4e-13 80.1 114 39.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.4e-13 79.3 75 50.7
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.4e-13 79.3 119 41.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.2e-13 79.0 114 42.1
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 4.1e-13 78.6 119 41.2
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 4.1e-13 78.6 122 40.2
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 4.1e-13 78.6 119 40.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.1e-13 78.6 101 45.5
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 5.4e-13 78.2 113 35.4
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 7.1e-13 77.8 120 42.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 7.1e-13 77.8 131 39.7
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 7.1e-13 77.8 119 41.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 7.1e-13 77.8 122 40.2
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.2e-13 77.4 77 51.9
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 9.2e-13 77.4 83 48.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 9.2e-13 77.4 80 51.2
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.2e-12 77.0 123 40.7
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.2e-12 77.0 123 37.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.6e-12 76.6 119 41.2
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.6e-12 76.6 93 44.1
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-12 76.3 120 41.7
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.1e-12 76.3 125 38.4
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.1e-12 76.3 115 45.2
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 2.1e-12 76.3 132 38.6
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 3.5e-12 75.5 118 35.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.5e-12 75.5 82 51.2
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 3.5e-12 75.5 120 39.2
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 4.6e-12 75.1 118 39.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 4.6e-12 75.1 76 51.3
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.6e-12 75.1 120 39.2
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.0e-12 74.7 90 44.4
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 6.0e-12 74.7 128 39.1
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.8e-12 74.3 108 41.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.8e-12 74.3 116 40.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.0e-11 73.9 88 42.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.0e-11 73.9 90 46.7
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.0e-11 73.9 115 44.3
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.3e-11 73.6 78 46.2
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.3e-11 73.6 87 44.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.3e-11 72.8 86 43.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.3e-11 72.8 92 43.5
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.3e-11 72.8 92 43.5
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.3e-11 72.8 106 43.4
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.9e-11 72.0 126 36.5
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.9e-11 72.0 126 40.5
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 3.9e-11 72.0 121 37.2
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.9e-11 72.0 114 42.1
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.1e-11 71.6 112 42.0
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 6.6e-11 71.2 79 45.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 8.6e-11 70.9 122 36.1
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 8.6e-11 70.9 87 43.7
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-10 70.5 92 42.4
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.1e-10 70.5 112 39.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.1e-10 70.5 130 36.9
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.1e-10 70.5 112 39.3
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.9e-10 69.7 79 50.6
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.3e-10 68.9 81 44.4
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.3e-10 68.9 79 50.6
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.3e-10 68.9 120 38.3
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 4.3e-10 68.6 115 42.6
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 5.6e-10 68.2 132 37.9
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.6e-10 68.2 79 45.6
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 5.6e-10 68.2 104 41.3
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 7.3e-10 67.8 132 37.9
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.3e-10 67.8 81 45.7
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.3e-10 67.8 125 33.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.6e-10 67.4 114 42.1
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.2e-09 67.0 80 47.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.6e-09 66.6 82 42.7
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.6e-09 66.6 93 40.9
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.1e-09 66.2 121 38.0
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.1e-09 66.2 94 41.5
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.8e-09 65.9 121 37.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-09 65.9 109 42.2
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.8e-09 65.9 94 44.7
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.6e-09 65.5 88 40.9
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.7e-09 65.1 72 43.1
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.7e-09 65.1 90 40.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.7e-09 65.1 113 37.2
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 4.7e-09 65.1 136 35.3
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.1e-08 63.9 77 39.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.1e-08 63.9 133 33.8
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.8e-08 63.2 93 39.8
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.8e-08 63.2 74 40.5
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.2e-08 61.6 70 41.4
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.8e-08 61.2 44 56.8
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.8e-08 61.2 89 38.2
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 6.8e-08 61.2 76 42.1
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.8e-08 61.2 74 36.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.0e-07 59.7 84 38.1
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.0e-07 59.7 68 44.1
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.4e-07 58.5 41 56.1
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.6e-07 57.8 77 40.3
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-06 57.0 115 35.7
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.3e-06 57.0 75 37.3
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.8e-06 55.5 49 57.1


User provided reference genes

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