Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 4.9e-73 277.7 140 100.0
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.3e-62 243.0 127 96.9
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.8e-60 235.3 123 96.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.4e-27 126.7 85 76.5
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 9.0e-27 124.0 127 60.6
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 2.6e-26 122.5 85 74.1
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 2.6e-26 122.5 85 74.1
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 2.6e-26 122.5 85 74.1
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 2.6e-26 122.5 85 74.1
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 2.6e-26 122.5 87 72.4
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 5.8e-26 121.3 92 69.6
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 7.6e-26 120.9 85 72.9
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 9.9e-26 120.6 87 73.6
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 1.3e-25 120.2 86 72.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.9e-25 119.0 87 71.3
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 2.9e-25 119.0 87 71.3
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 6.4e-25 117.9 95 68.4
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.4e-24 116.7 91 72.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.4e-24 116.7 88 71.6
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 7.1e-24 114.4 83 73.5
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.2e-23 113.6 127 57.5
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 2.7e-23 112.5 116 60.3
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 2.7e-23 112.5 83 72.3
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.9e-23 110.9 122 57.4
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.0e-22 110.5 83 69.9
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.0e-22 110.5 84 69.0
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.0e-22 110.5 122 54.9
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.0e-22 110.5 85 67.1
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.0e-22 110.5 83 71.1
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 2.3e-22 109.4 83 69.9
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 3.9e-22 108.6 83 68.7
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 3.9e-22 108.6 85 65.9
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.1e-21 107.1 91 61.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 2.5e-21 105.9 123 52.8
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 2.5e-21 105.9 122 55.7
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.3e-21 105.5 87 64.4
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 4.3e-21 105.1 84 65.5
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 4.3e-21 105.1 85 64.7
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 4.3e-21 105.1 71 77.5
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 7.4e-21 104.4 78 65.4
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 7.4e-21 104.4 96 58.3
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 1.3e-20 103.6 123 52.8
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 1.6e-20 103.2 79 72.2
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 3.7e-20 102.1 127 49.6
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 3.7e-20 102.1 87 59.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 3.7e-20 102.1 84 66.7
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.8e-20 101.7 84 64.3
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 4.8e-20 101.7 127 49.6
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 4.8e-20 101.7 127 49.6
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 6.2e-20 101.3 127 50.4
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 6.2e-20 101.3 88 62.5
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 8.1e-20 100.9 72 72.2
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 8.1e-20 100.9 72 72.2
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.1e-19 100.5 92 59.8
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.1e-19 100.5 84 64.3
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.8e-19 99.8 78 65.4
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.8e-19 99.8 78 64.1
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 2.4e-19 99.4 76 65.8
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 3.1e-19 99.0 127 48.8
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.3e-19 98.2 79 69.6
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 6.9e-19 97.8 91 56.0
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 6.9e-19 97.8 91 56.0
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.5e-18 95.1 93 57.0
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 7.6e-18 94.4 120 47.5
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.6e-18 94.4 92 57.6
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 7.6e-18 94.4 92 57.6
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.3e-17 93.6 127 47.2
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.3e-17 93.6 92 57.6
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 2.2e-17 92.8 123 48.8
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 2.2e-17 92.8 118 49.2
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 3.8e-17 92.0 83 60.2
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 3.8e-17 92.0 83 60.2
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 1.4e-16 90.1 126 47.6
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.4e-16 90.1 115 49.6
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.9e-16 89.7 115 49.6
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 2.5e-16 89.4 122 48.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.5e-16 89.4 83 61.4
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.5e-16 89.4 84 58.3
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.5e-16 89.4 83 62.7
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.2e-16 89.0 122 48.4
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 3.2e-16 89.0 84 59.5
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 7.1e-16 87.8 115 49.6
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.6e-15 86.7 83 59.0
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.1e-15 86.3 87 56.3
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.1e-15 86.3 93 51.6
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.7e-15 85.9 85 57.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.6e-15 85.1 92 54.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 4.6e-15 85.1 74 63.5
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 6.0e-15 84.7 90 54.4
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.0e-15 84.7 90 54.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.9e-15 84.3 84 57.1
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.0e-14 84.0 122 46.7
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.3e-14 82.8 84 56.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.3e-14 82.8 81 56.8
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.3e-14 82.8 90 53.3
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.3e-14 82.8 90 53.3
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.3e-14 82.8 84 57.1
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 3.0e-14 82.4 71 63.4
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 3.9e-14 82.0 94 53.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 3.9e-14 82.0 99 47.5
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 5.1e-14 81.6 85 55.3
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 5.1e-14 81.6 91 51.6
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 5.1e-14 81.6 99 47.5
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 8.7e-14 80.9 78 56.4
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.5e-13 80.1 94 52.1
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 3.3e-13 79.0 99 48.5
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 4.3e-13 78.6 83 55.4
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 5.7e-13 78.2 96 45.8
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 8.2e-12 74.3 84 46.4
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 1.2e-10 70.5 68 51.5
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 2.6e-10 69.3 96 41.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.6e-10 69.3 96 41.7
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.4e-08 63.5 46 67.4
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 7.2e-08 61.2 55 60.0
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 3.6e-07 58.9 61 55.7
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.0e-06 57.4 71 47.9


User provided reference genes

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