Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 2.1e-163 579.3 368 100.0
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 4.3e-161 571.6 368 98.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 3.1e-159 565.5 369 98.4
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 9.9e-158 560.5 372 97.6
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 9.9e-158 560.5 373 97.6
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 3.2e-156 555.4 373 96.5
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.9e-145 519.6 319 94.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 7.3e-145 517.7 325 92.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 4.0e-143 511.9 323 92.3
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 9.0e-143 510.8 318 93.4
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.5e-137 493.4 325 88.6
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 3.7e-136 488.8 370 89.7
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 8.4e-133 477.6 326 83.7
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.8e-125 452.2 321 85.4
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 3.7e-120 435.6 328 75.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 2.5e-108 396.4 328 75.0
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-105 387.5 333 72.7
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.6e-105 386.3 332 72.0
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.6e-105 386.3 336 72.0
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 7.4e-105 384.8 347 70.3
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 6.3e-104 381.7 326 72.7
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 2.4e-103 379.8 330 70.9
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.0e-102 376.7 324 71.9
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 5.9e-102 375.2 337 68.2
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.9e-101 372.9 321 71.0
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.8e-101 372.5 327 70.6
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.0e-101 372.1 331 71.9
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 6.5e-101 371.7 323 69.7
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 8.5e-101 371.3 337 66.5
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 8.5e-101 371.3 252 77.0
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.1e-100 370.9 329 69.6
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.4e-100 370.5 329 68.7
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.9e-100 370.2 330 72.4
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 3.2e-100 369.4 339 66.7
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 2.7e-99 366.3 247 78.1
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.7e-99 365.5 337 69.4
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.7e-99 365.5 323 66.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 8.0e-99 364.8 320 70.3
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 8.0e-99 364.8 323 71.8
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.4e-98 364.0 326 70.6
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.4e-98 364.0 332 70.5
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.8e-98 363.6 335 65.4
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.8e-98 363.6 342 65.8
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.6e-97 359.8 247 76.9
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.3e-97 359.4 326 71.5
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 7.4e-97 358.2 333 68.5
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 9.7e-97 357.8 346 67.6
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 9.7e-97 357.8 346 67.6
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 4.8e-96 355.5 354 67.8
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 6.3e-96 355.1 320 70.3
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 8.2e-96 354.8 332 66.9
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.1e-95 352.8 329 68.4
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.6e-94 350.5 369 63.7
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 3.5e-94 349.4 327 69.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.9e-94 348.6 326 69.0
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 7.7e-94 348.2 331 60.1
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 5.0e-93 345.5 320 64.7
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.5e-92 344.0 332 62.7
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.5e-92 344.0 332 62.7
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.9e-92 343.6 325 64.9
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.2e-92 342.4 328 68.0
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 4.2e-92 342.4 330 64.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 3.6e-91 339.3 321 62.6
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 6.1e-91 338.6 328 68.9
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 6.1e-91 338.6 321 66.4
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 3.0e-90 336.3 319 66.8
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 4.0e-90 335.9 330 61.2
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 4.0e-90 335.9 317 61.5
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 4.0e-90 335.9 329 61.4
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.5e-89 334.0 322 66.8
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 2.0e-89 333.6 331 65.3
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 3.3e-89 332.8 318 63.5
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 7.5e-89 331.6 248 70.6
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 9.7e-89 331.3 331 59.8
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.2e-88 330.1 342 64.3
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.8e-88 329.7 241 73.9
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 4.8e-88 328.9 334 62.6
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.8e-88 328.9 246 72.0
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.1e-87 327.8 256 70.3
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 4.1e-87 325.9 320 60.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 9.1e-87 324.7 248 74.2
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.6e-86 323.9 325 65.8
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.0e-86 323.6 336 66.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.5e-86 322.4 352 61.9
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.3e-85 320.9 332 66.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 2.9e-85 319.7 326 65.3
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 5.0e-85 318.9 323 65.0
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 5.0e-85 318.9 286 63.6
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 6.5e-85 318.5 216 79.6
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.1e-84 317.8 322 64.3
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.9e-84 317.0 320 61.2
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.0e-82 311.2 324 66.0
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 3.0e-82 309.7 252 68.7
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 2.6e-81 306.6 340 57.9
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 4.4e-81 305.8 332 60.8
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 7.0e-79 298.5 211 76.8
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-78 297.0 325 64.9
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.0e-78 297.0 325 64.9
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.0e-77 294.7 245 65.3
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 3.8e-77 292.7 237 66.2
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.5e-76 290.8 210 76.2
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 8.0e-75 285.0 324 54.6
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 1.0e-74 284.6 240 67.9
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.3e-74 283.5 226 72.6
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 3.0e-74 283.1 327 62.7
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 3.0e-74 283.1 327 62.7
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 6.8e-74 282.0 404 48.5
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 6.8e-74 282.0 327 62.7
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 8.9e-74 281.6 328 56.7
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.2e-73 281.2 218 72.0
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 2.0e-73 280.4 336 56.2
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.6e-73 280.0 236 64.8
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.6e-73 280.0 237 65.4
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 6.3e-72 275.4 227 68.7
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.1e-71 273.1 325 53.5
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.3e-69 267.7 328 51.5
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.9e-68 263.8 213 74.6
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 4.3e-68 262.7 334 54.2
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.6e-67 260.8 319 59.2
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 2.1e-67 260.4 205 71.2
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 3.4e-65 253.1 336 57.4
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.7e-64 250.8 183 74.9
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 2.2e-64 250.4 321 50.2
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 8.6e-61 238.4 330 57.0
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 7.5e-49 198.7 263 46.8
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.1e-47 193.0 220 59.1
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 9.2e-47 191.8 212 64.2
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.0e-37 160.2 102 84.3
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 6.6e-37 159.1 158 59.5
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.5e-36 157.9 131 69.5
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 4.8e-27 126.3 156 46.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 6.2e-27 125.9 148 43.2
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 9.0e-26 122.1 136 45.6
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.3e-24 118.2 213 46.0
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.1e-22 110.9 121 46.3
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.1e-20 105.1 148 39.9
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.8e-19 100.5 119 44.5
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.8e-18 97.8 125 63.2
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.2e-17 95.1 112 63.4
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.2e-17 95.1 130 38.5
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 4.9e-16 89.7 115 64.3
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 2.7e-14 84.0 116 47.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.3e-13 81.6 53 67.9
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.0e-13 80.5 116 55.2
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 5.1e-13 79.7 104 53.8
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 1.5e-12 78.2 124 58.1
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 6.2e-11 72.8 37 81.1
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.9e-08 63.9 35 80.0


User provided reference genes

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