Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 3.8e-227 791.2 402 100.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 3.8e-227 791.2 402 100.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 5.3e-221 770.8 402 97.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.0e-220 768.8 402 97.0
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.5e-217 758.1 406 95.3
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.4e-212 741.5 401 94.0
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.2e-202 708.0 375 95.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 2.9e-195 685.3 411 83.2
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.4e-184 649.8 411 80.0
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.3e-182 643.3 415 80.0
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 5.9e-180 634.4 415 78.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.7e-179 632.9 402 81.1
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-179 632.5 395 81.8
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.2e-179 632.5 395 81.8
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-177 626.7 401 80.8
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-171 605.9 357 84.6
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.1e-170 603.6 408 77.5
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 7.0e-165 584.3 411 72.5
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.4e-160 570.1 414 70.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.1e-141 505.4 359 70.2
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.7e-139 500.0 393 65.1
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 5.0e-139 498.4 355 70.1
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.3e-138 495.7 407 63.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.3e-138 495.7 351 69.8
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.7e-137 491.9 351 69.2
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.0e-137 491.1 407 63.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.4e-136 490.3 351 68.7
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.4e-136 490.3 401 62.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.8e-136 490.0 411 62.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.8e-136 490.0 330 71.8
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 5.2e-136 488.4 324 72.5
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.6e-135 486.1 353 68.8
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 3.4e-135 485.7 351 69.2
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 5.8e-135 485.0 368 65.5
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 5.8e-135 485.0 325 74.2
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 7.5e-135 484.6 332 71.7
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.8e-135 484.2 361 67.3
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.7e-134 483.4 329 72.0
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-134 483.4 325 73.8
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-134 483.4 325 73.8
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 2.9e-134 482.6 353 67.7
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 3.7e-134 482.3 329 69.3
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 6.4e-134 481.5 333 71.5
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 8.3e-134 481.1 346 67.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.0e-131 474.2 411 59.9
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.3e-131 473.8 329 70.5
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.3e-131 473.8 332 70.2
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 2.3e-131 473.0 374 64.7
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.3e-131 473.0 354 66.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 3.9e-131 472.2 328 68.9
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.9e-131 472.2 348 66.7
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 8.6e-131 471.1 316 72.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.1e-130 470.7 342 67.8
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.5e-130 470.3 318 72.3
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.9e-130 469.9 344 68.0
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.1e-129 466.5 347 67.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.1e-129 466.5 319 69.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.8e-129 466.1 335 67.8
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 4.7e-129 465.3 317 71.9
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 4.7e-129 465.3 347 67.1
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.1e-128 464.2 347 66.3
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.2e-128 461.8 356 64.0
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 5.2e-128 461.8 346 65.6
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.5e-127 460.3 357 65.8
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 2.0e-127 459.9 399 60.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.6e-127 459.5 344 64.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 9.8e-127 457.6 316 69.9
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.3e-126 457.2 382 59.4
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.2e-126 456.4 382 59.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.9e-126 456.1 324 67.6
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 8.3e-126 454.5 314 69.7
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.1e-125 454.1 346 63.0
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.1e-125 454.1 346 63.0
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.1e-125 454.1 304 72.4
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.9e-125 453.4 325 68.9
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.4e-125 453.0 346 62.7
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.2e-125 452.6 316 69.9
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 3.2e-125 452.6 346 62.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 9.2e-125 451.1 382 59.4
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.6e-124 450.3 318 67.3
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.5e-124 449.1 314 68.8
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 7.8e-124 448.0 261 84.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.3e-123 446.4 377 59.4
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.6e-123 444.9 321 68.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 8.6e-123 444.5 388 56.7
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.3e-122 442.6 315 67.0
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 5.6e-122 441.8 365 60.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.2e-121 440.7 343 61.8
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 4.7e-121 438.7 349 61.3
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.2e-121 438.3 329 63.8
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 8.1e-121 438.0 317 66.9
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.1e-120 437.6 330 64.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.3e-120 436.4 344 61.9
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.3e-118 430.6 406 56.4
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 9.2e-117 424.5 376 57.2
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.1e-113 413.3 316 65.5
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 4.7e-113 412.1 345 59.7
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.8e-112 410.2 336 60.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.0e-112 409.1 423 52.0
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.4e-110 401.4 270 72.2
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 8.4e-110 401.4 346 61.3
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 1.7e-107 393.7 327 63.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.3e-107 393.3 355 58.3
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.9e-107 392.5 269 69.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 5.3e-104 382.1 307 60.9
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 7.6e-103 378.3 329 56.5
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 2.2e-102 376.7 282 66.3
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.2e-102 376.7 311 62.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.2e-101 372.9 283 67.5
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.8e-97 359.8 299 60.5
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.0e-96 355.9 318 56.0
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.9e-96 355.1 520 41.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.5e-90 336.7 322 53.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 9.6e-90 334.7 317 52.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.6e-89 334.0 332 52.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.5e-87 327.4 346 53.2
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 5.8e-87 325.5 332 51.8
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 3.0e-83 313.2 216 72.2
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 5.5e-77 292.4 233 69.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.2e-76 291.2 220 59.5
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 4.6e-76 289.3 226 63.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.5e-74 283.5 267 55.4
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 4.8e-73 279.3 224 61.6
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.6e-68 264.2 173 71.7
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.8e-65 253.4 205 64.4
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.4e-64 250.4 188 70.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.9e-64 248.8 224 58.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 6.5e-62 242.3 202 62.9
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.7e-60 236.9 244 52.5
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 7.0e-56 222.2 117 85.5
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.7e-50 201.8 224 50.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 5.4e-40 169.5 303 34.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.5e-37 160.6 315 32.7
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.5e-37 159.5 150 51.3
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.0e-35 153.3 93 74.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.4e-32 144.8 313 33.2
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-28 131.0 84 72.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.3e-22 111.7 98 48.0
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 8.9e-19 99.0 95 50.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.6e-15 88.2 81 66.7
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.2e-12 78.6 63 58.7
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.8e-11 74.7 189 29.1


User provided reference genes

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