Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 6.4e-108 394.0 193 100.0
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 6.4e-108 394.0 193 100.0
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 3.2e-107 391.7 193 99.5
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 4.6e-98 361.3 194 94.3
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 1.1e-96 356.7 194 93.3
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 1.9e-91 339.3 200 86.5
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 3.6e-66 255.4 203 67.0
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 1.5e-64 250.0 208 63.9
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 9.1e-54 214.2 198 59.6
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 1.5e-51 206.8 193 60.1
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 5.5e-51 204.9 193 59.6
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 7.2e-51 204.5 193 59.6
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 4.7e-50 201.8 206 55.3
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 3.7e-47 192.2 193 57.5
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 3.7e-47 192.2 193 57.5
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 3.1e-46 189.1 203 53.7
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 3.5e-45 185.7 193 53.4
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 1.3e-44 183.7 194 54.6
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 1.2e-40 170.6 114 75.4
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 1.7e-39 166.8 114 73.7
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 1.7e-39 166.8 114 73.7
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 4.9e-39 165.2 114 72.8
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 4.9e-39 165.2 114 72.8
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 1.6e-34 150.2 201 45.8
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 2.2e-15 86.7 190 33.7
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 2.9e-15 86.3 170 35.9
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.4e-14 84.0 136 39.7
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 5.4e-14 82.0 154 34.4
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 1.6e-13 80.5 142 34.5
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 2.7e-13 79.7 142 35.2
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 3.5e-13 79.3 153 32.7
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 4.6e-13 79.0 156 34.0
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 7.8e-13 78.2 138 34.1
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.0e-12 77.8 159 34.6
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.7e-12 77.0 160 33.8
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 2.3e-12 76.6 141 34.8
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 1.1e-11 74.3 186 33.9
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.5e-11 73.9 156 32.7
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 1.5e-11 73.9 138 32.6
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.5e-11 73.2 134 34.3
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 3.3e-11 72.8 191 30.4
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 4.3e-11 72.4 154 31.8
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 9.5e-11 71.2 142 38.0
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 1.2e-10 70.9 63 54.0
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 1.2e-10 70.9 156 35.9
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 1.6e-10 70.5 66 53.0
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 3.6e-10 69.3 148 34.5
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 4.7e-10 68.9 171 31.0
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 1.1e-09 67.8 193 29.5
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 1.4e-09 67.4 197 26.4
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.4e-09 67.4 198 26.8
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 1.4e-09 67.4 157 29.3
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 2.3e-09 66.6 153 33.3
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 2.3e-09 66.6 87 39.1
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.1e-09 66.2 146 30.8
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 4.0e-09 65.9 197 26.4
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 5.2e-09 65.5 161 29.8
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 6.8e-09 65.1 151 32.5
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 8.9e-09 64.7 202 28.2
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.9e-09 64.7 135 28.9
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 8.9e-09 64.7 141 27.7
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.0e-08 63.5 146 30.8
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 4.4e-08 62.4 168 31.5
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 7.6e-08 61.6 188 29.3
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 7.6e-08 61.6 135 28.9
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 7.6e-08 61.6 203 26.1
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 1.7e-07 60.5 164 25.0
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 2.2e-07 60.1 159 29.6
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.2e-07 60.1 162 26.5
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 2.2e-07 60.1 70 38.6
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 134 33.6
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 3.7e-07 59.3 85 37.6
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 4.9e-07 58.9 71 40.8
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 4.9e-07 58.9 67 38.8
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 4.9e-07 58.9 134 32.8
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 8.4e-07 58.2 137 27.7
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 8.4e-07 58.2 144 28.5
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 8.4e-07 58.2 161 31.1
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 1.4e-06 57.4 143 30.8
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.4e-06 57.4 154 24.7
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.4e-06 57.4 135 31.1
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 1.9e-06 57.0 151 26.5
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 2.4e-06 56.6 69 37.7
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 2.4e-06 56.6 158 26.6
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 4.1e-06 55.8 63 44.4
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 5.4e-06 55.5 129 28.7


User provided reference genes

Program Settings