Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18775 Brassica carinata HOM05D007033 ORTHO05D008770 4.3e-71 271.2 133 100.0
C09p59560 Brassica napus HOM05D007033 ORTHO05D008770 4.3e-71 271.2 133 100.0
BolC9t58794H Brassica oleracea HOM05D007033 ORTHO05D008770 4.3e-71 271.2 133 100.0
Sp6g26610 Schrenkiella parvula HOM05D007033 ORTHO05D008770 1.1e-55 219.9 124 86.3
C02p09210 Brassica napus HOM05D007033 ORTHO05D008770 5.7e-55 217.6 125 84.8
BcaC03g13530 Brassica carinata HOM05D007033 ORTHO05D008770 7.4e-55 217.2 125 84.0
BolC2t06829H Brassica oleracea HOM05D007033 ORTHO05D008770 7.4e-55 217.2 125 84.0
A02p04360 Brassica napus HOM05D007033 ORTHO05D008770 1.7e-54 216.1 125 83.2
BraA02t05400Z Brassica rapa HOM05D007033 ORTHO05D008770 1.7e-54 216.1 125 83.2
AL6G28700 Arabidopsis lyrata HOM05D007033 ORTHO05D008770 4.1e-53 211.5 124 83.1
Thhalv10014961m.g Eutrema salsugineum HOM05D007033 ORTHO05D008770 2.0e-52 209.1 124 80.6
CARHR195570 Cardamine hirsuta HOM05D007033 ORTHO05D008770 7.7e-52 207.2 125 80.0
AT5G17610 Arabidopsis thaliana HOM05D007033 ORTHO05D008770 1.3e-51 206.5 125 80.8
Carub.0006s1585 Capsella rubella HOM05D007033 ORTHO05D008770 1.9e-50 202.6 124 80.6
THA.LOC104827245 Tarenaya hassleriana HOM05D007033 ORTHO05D008770 2.4e-45 185.7 127 74.8
BraA10t44240Z Brassica rapa HOM05D007033 ORTHO05D008770 2.9e-43 178.7 110 83.6
PGR042G3214 Punica granatum HOM05D007033 ORTHO05D008770 1.6e-41 172.9 122 68.9
GSVIVG01011318001 Vitis vinifera HOM05D007033 ORTHO05D008770 8.0e-41 170.6 119 68.1
Nn3g19225 Nelumbo nucifera HOM05D007033 ORTHO05D008770 2.3e-40 169.1 125 68.8
Aqoxy5G03237 Aquilegia oxysepala HOM05D007033 ORTHO05D008770 3.0e-40 168.7 96 77.1
Dinv43975 Davidia involucrata HOM05D007033 ORTHO05D008770 8.8e-40 167.2 95 77.9
FvH4_7g07210 Fragaria vesca HOM05D007033 ORTHO05D008770 1.1e-39 166.8 112 68.8
FAN03G2679 Fragaria x ananassa HOM05D007033 ORTHO05D008770 1.1e-39 166.8 112 68.8
TWI60G0127 Tripterygium wilfordii HOM05D007033 ORTHO05D008770 1.1e-39 166.8 122 65.6
Prupe.2G100000 Prunus persica HOM05D007033 ORTHO05D008770 2.0e-39 166.0 117 68.4
Ciclev10033075m.g Citrus clementina HOM05D007033 ORTHO05D008770 2.6e-39 165.6 118 66.9
RcHm_v2.0_Chr1g0337311 Rosa chinensis HOM05D007033 ORTHO05D008770 2.6e-39 165.6 112 67.9
FAN06G3925 Fragaria x ananassa HOM05D007033 ORTHO05D008770 3.3e-39 165.2 112 67.9
EL10Ac1g00673 Beta vulgaris HOM05D007033 ORTHO05D008770 4.4e-39 164.9 110 70.0
Gohir.A13G085300 Gossypium hirsutum HOM05D007033 ORTHO05D008770 4.4e-39 164.9 112 68.8
VMungo0331G1478 Vigna mungo HOM05D007033 ORTHO05D008770 4.4e-39 164.9 111 69.4
Manes.08G157600 Manihot esculenta HOM05D007033 ORTHO05D008770 7.4e-39 164.1 111 72.1
Thecc.05G231700 Theobroma cacao HOM05D007033 ORTHO05D008770 7.4e-39 164.1 112 67.0
Eucgr.E01772 Eucalyptus grandis HOM05D007033 ORTHO05D008770 9.7e-39 163.7 111 68.5
Phvul.010G038500 Phaseolus vulgaris HOM05D007033 ORTHO05D008770 1.3e-38 163.3 111 67.6
Lj3g0004375 Lotus japonicus HOM05D007033 ORTHO05D008770 1.7e-38 162.9 95 73.7
MD07G1078200 Malus domestica HOM05D007033 ORTHO05D008770 2.8e-38 162.2 118 66.9
Sc23g0004770 Simmondsia chinensis HOM05D007033 ORTHO05D008770 2.8e-38 162.2 106 72.6
Hma1.2p1_0353F.1_g133340 Hydrangea macrophylla HOM05D007033 ORTHO05D008770 3.7e-38 161.8 96 72.9
MD02G1238400 Malus domestica HOM05D007033 ORTHO05D008770 6.3e-38 161.0 95 74.7
Potri.013G073100 Populus trichocarpa HOM05D007033 ORTHO05D008770 6.3e-38 161.0 119 64.7
CANSAT35G1406 Cannabis sativa HOM05D007033 ORTHO05D008770 8.2e-38 160.6 113 65.5
ClCG05G002970 Citrullus lanatus HOM05D007033 ORTHO05D008770 8.2e-38 160.6 95 74.7
CsaV3_3G010550 Cucumis sativus L. HOM05D007033 ORTHO05D008770 8.2e-38 160.6 112 67.9
Gohir.D13G100400 Gossypium hirsutum HOM05D007033 ORTHO05D008770 8.2e-38 160.6 112 67.0
Gorai.013G112100 Gossypium raimondii HOM05D007033 ORTHO05D008770 8.2e-38 160.6 112 67.0
Rhsim12G0078100 Rhododendron simsii HOM05D007033 ORTHO05D008770 8.2e-38 160.6 95 76.8
Haze_15805 Corylus avellana HOM05D007033 ORTHO05D008770 1.4e-37 159.8 117 65.0
Actinidia21596 Actinidia chinensis HOM05D007033 ORTHO05D008770 1.8e-37 159.5 121 66.1
MELO3C006276.2 Cucumis melo HOM05D007033 ORTHO05D008770 2.4e-37 159.1 112 67.0
arahy.Tifrunner.gnm1.ann1.14YBGE Arachis hypogaea HOM05D007033 ORTHO05D008770 3.1e-37 158.7 118 62.7
arahy.Tifrunner.gnm1.ann1.GIK8C1 Arachis hypogaea HOM05D007033 ORTHO05D008770 3.1e-37 158.7 118 62.7
Glyma.03G098200 Glycine max HOM05D007033 ORTHO05D008770 3.1e-37 158.7 118 61.9
PSO063G1631 Papaver somniferum HOM05D007033 ORTHO05D008770 4.1e-37 158.3 94 72.3
Cc02_g26390 Coffea canephora HOM05D007033 ORTHO05D008770 7.0e-37 157.5 112 67.0
Sed0003013 Sechium edule HOM05D007033 ORTHO05D008770 7.0e-37 157.5 114 66.7
Glyma.07G123600 Glycine max HOM05D007033 ORTHO05D008770 9.1e-37 157.1 111 64.0
PSO782G0028 Papaver somniferum HOM05D007033 ORTHO05D008770 2.0e-36 156.0 115 62.6
Lalb_Chr12g0210181 Lupinus albus HOM05D007033 ORTHO05D008770 3.5e-36 155.2 117 63.2
CAN.G700.33 Capsicum annuum HOM05D007033 ORTHO05D008770 4.5e-36 154.8 114 64.0
ECA234G3633 Erigeron canadensis HOM05D007033 ORTHO05D008770 4.5e-36 154.8 94 71.3
Lsat_1_v5_gn_4_42281 Lactuca sativa HOM05D007033 ORTHO05D008770 4.5e-36 154.8 96 71.9
PGSC0003DMG400001787 Solanum tuberosum HOM05D007033 ORTHO05D008770 4.5e-36 154.8 117 61.5
vmacro21112 Vaccinium macrocarpon HOM05D007033 ORTHO05D008770 5.9e-36 154.5 93 75.3
Migut.B01441 Erythranthe guttata HOM05D007033 ORTHO05D008770 7.7e-36 154.1 97 71.1
MBI16_g43713_MAGBIO Magnolia biondii HOM05D007033 ORTHO05D008770 7.7e-36 154.1 91 74.7
CDE12G0505 Ceratophyllum demersum HOM05D007033 ORTHO05D008770 1.0e-35 153.7 111 65.8
HanXRQChr03g0088201 Helianthus annuus HOM05D007033 ORTHO05D008770 1.0e-35 153.7 124 58.1
Zm00001eb009070 Zea mays HOM05D007033 ORTHO05D008770 1.3e-35 153.3 113 64.6
Sopen01g032780 Solanum pennellii HOM05D007033 ORTHO05D008770 2.2e-35 152.5 112 64.3
Hund17162 Selenicereus undatus HOM05D007033 ORTHO05D008770 2.9e-35 152.1 118 61.0
Solyc01g081200.3 Solanum lycopersicum HOM05D007033 ORTHO05D008770 2.9e-35 152.1 112 64.3
CiPaw.02G048600 Carya illinoinensis HOM05D007033 ORTHO05D008770 3.8e-35 151.8 115 64.3
TPR.G17361 Trifolium pratense HOM05D007033 ORTHO05D008770 8.5e-35 150.6 118 60.2
Peaxi162Scf00592g00448 Petunia axillaris HOM05D007033 ORTHO05D008770 1.1e-34 150.2 121 60.3
HPP92_003427 Vanilla planifolia HOM05D007033 ORTHO05D008770 1.5e-34 149.8 115 65.2
HPP92_003404 Vanilla planifolia HOM05D007033 ORTHO05D008770 2.5e-34 149.1 115 64.3
COL.COLO4_08541 Corchorus olitorius HOM05D007033 ORTHO05D008770 5.5e-34 147.9 98 70.4
Sabra13G0063200 Salix brachista HOM05D007033 ORTHO05D008770 7.2e-34 147.5 104 69.2
SGA_v2.0_scaffold98G29399 Striga asiatica HOM05D007033 ORTHO05D008770 3.6e-33 145.2 137 56.9
QL04p052404 Quercus lobata HOM05D007033 ORTHO05D008770 1.4e-32 143.3 82 75.6
Psat4g215800 Pisum sativum HOM05D007033 ORTHO05D008770 2.3e-32 142.5 106 64.2
Cfa003682 Carpinus fangiana HOM05D007033 ORTHO05D008770 6.8e-32 141.0 132 56.8
Sed0002871 Sechium edule HOM05D007033 ORTHO05D008770 6.8e-32 141.0 95 65.3
MBI16_g43476_MAGBIO Magnolia biondii HOM05D007033 ORTHO05D008770 1.7e-30 136.3 106 64.2
Sc23g0004660 Simmondsia chinensis HOM05D007033 ORTHO05D008770 4.8e-30 134.8 110 61.8
SalBow5G2417 Salvia bowleyana HOM05D007033 ORTHO05D008770 6.3e-30 134.4 81 74.1
ATR0829G185 Amborella trichopoda HOM05D007033 ORTHO05D008770 8.3e-30 134.0 82 75.6
Nitab4.5_0004594g0020 Nicotiana tabacum HOM05D007033 ORTHO05D008770 7.0e-29 131.0 98 63.3
unitig_8.g3853 Utricularia gibba HOM05D007033 ORTHO05D008770 7.0e-29 131.0 92 62.0
Nitab4.5_0004800g0080 Nicotiana tabacum HOM05D007033 ORTHO05D008770 1.2e-28 130.2 97 62.9
Ah.05g177250 Amaranthus hybridus HOM05D007033 ORTHO05D008770 3.5e-28 128.6 99 61.6
AUR62014520 Chenopodium quinoa HOM05D007033 ORTHO05D008770 1.3e-27 126.7 92 68.5
SEGI_14041 Sequoiadendron giganteum HOM05D007033 ORTHO05D008770 2.9e-27 125.6 120 57.5
AUR62038014 Chenopodium quinoa HOM05D007033 ORTHO05D008770 1.1e-26 123.6 92 67.4
HPP92_025932 Vanilla planifolia HOM05D007033 ORTHO05D008770 3.6e-25 118.6 103 57.3
A10p21800 Brassica napus HOM05D007033 ORTHO05D008770 3.4e-23 112.1 58 86.2
SMO351G0381 Selaginella moellendorffii HOM05D007033 ORTHO05D008770 1.2e-20 103.6 107 45.8
TAR629G3499 Trochodendron aralioides HOM05D007033 ORTHO05D008770 1.7e-19 99.8 54 79.6
AagrBONN_evm.TU.Sc2ySwM_368.1536 Anthoceros agrestis HOM05D007033 ORTHO05D008770 2.9e-19 99.0 106 46.2
Pp3c19_9960 Physcomitrium patens HOM05D007033 ORTHO05D008770 8.6e-19 97.4 105 46.7
Mapoly0058s0110 Marchantia polymorpha HOM05D007033 ORTHO05D008770 1.5e-18 96.7 111 46.8
Pp3c7_5640 Physcomitrium patens HOM05D007033 ORTHO05D008770 2.8e-17 92.4 116 44.0
Pp3c18_1710 Physcomitrium patens HOM05D007033 ORTHO05D008770 8.0e-17 90.9 106 48.1
Atru.chr2.1689 Acer truncatum HOM05D007033 ORTHO05D008770 2.7e-12 75.9 44 77.3
Sopen05g015510 Solanum pennellii HOM05D007033 ORTHO05D008770 2.3e-11 72.8 49 65.3
Aa31LG11G12040 Aethionema arabicum HOM05D007033 ORTHO05D008770 1.6e-09 66.6 53 71.7
MCO10G230 Micromonas commoda HOM05D007033 ORTHO05D008770 2.9e-06 55.8 99 32.3
Peaxi162Scf00117g01735 Petunia axillaris HOM05D007033 ORTHO05D008770 6.4e-06 54.7 57 50.9


User provided reference genes

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