Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 3.7e-112 408.3 215 100.0
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 3.8e-101 371.7 270 78.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 5.0e-85 318.2 330 61.5
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 5.0e-85 318.2 330 61.5
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 5.0e-85 318.2 330 61.5
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 5.0e-85 318.2 330 61.5
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 2.5e-84 315.8 330 61.2
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 5.5e-84 314.7 330 60.9
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 7.2e-84 314.3 330 60.6
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 9.4e-84 313.9 330 60.6
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 4.7e-83 311.6 330 60.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 4.0e-82 308.5 330 59.7
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 8.8e-82 307.4 329 59.3
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 8.2e-80 300.8 330 58.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 9.1e-79 297.4 329 59.9
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.2e-73 280.4 314 55.7
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.7e-72 276.6 329 53.5
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.2e-72 276.2 329 53.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.8e-72 275.8 329 53.2
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.1e-71 273.9 328 52.7
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 1.4e-71 273.5 328 53.0
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.4e-71 273.5 329 53.2
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.4e-71 273.5 325 54.8
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 7.0e-71 271.2 328 52.4
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 7.0e-71 271.2 328 52.1
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 9.1e-71 270.8 328 52.4
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.2e-70 270.4 329 52.3
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.6e-70 270.0 314 55.7
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.5e-70 268.9 325 52.9
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 4.5e-70 268.5 328 52.4
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.0e-69 267.3 329 51.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.7e-69 266.5 327 52.6
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 3.8e-69 265.4 329 52.3
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.8e-69 265.4 329 52.3
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.8e-69 265.4 329 52.3
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 3.8e-69 265.4 326 52.5
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 5.0e-69 265.0 329 52.3
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 5.0e-69 265.0 327 52.3
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.9e-68 263.1 325 52.0
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.9e-68 263.1 325 52.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.5e-68 262.7 329 52.3
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.5e-68 262.7 313 53.4
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.5e-68 262.7 329 51.4
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 4.2e-68 261.9 328 52.4
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 4.2e-68 261.9 329 51.7
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 5.5e-68 261.5 335 51.6
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 7.2e-68 261.2 326 51.2
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 9.4e-68 260.8 325 52.3
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 9.4e-68 260.8 326 51.5
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.2e-67 260.4 328 52.4
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.2e-67 260.4 329 52.3
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 1.2e-67 260.4 329 51.4
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 3.6e-67 258.8 329 51.1
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.1e-67 258.1 327 49.2
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 8.0e-67 257.7 327 49.5
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.0e-66 257.3 327 50.2
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.4e-66 256.9 329 51.1
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.4e-66 256.9 329 51.1
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 2.3e-66 256.1 329 51.4
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 3.0e-66 255.8 299 53.2
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 4.0e-66 255.4 329 50.8
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 5.2e-66 255.0 134 100.0
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 6.8e-66 254.6 329 48.3
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 8.8e-66 254.2 327 50.2
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 8.8e-66 254.2 327 50.2
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 8.8e-66 254.2 327 50.2
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.5e-65 253.4 328 50.6
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-65 253.1 329 50.8
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 2.0e-65 253.1 327 49.8
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 2.6e-65 252.7 327 50.2
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 3.4e-65 252.3 327 49.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 5.7e-65 251.5 381 45.4
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 9.8e-65 250.8 325 50.2
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.3e-64 250.4 329 48.3
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.2e-64 249.6 327 48.9
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 3.7e-64 248.8 328 50.6
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 4.9e-64 248.4 327 48.9
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 8.3e-64 247.7 327 49.2
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.1e-63 247.3 328 49.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.4e-63 246.9 328 48.2
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.4e-63 246.1 327 48.9
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.4e-63 246.1 327 48.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.1e-63 245.7 327 48.9
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 4.1e-63 245.4 356 45.5
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 9.2e-63 244.2 327 48.9
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-62 243.4 277 57.4
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.6e-62 243.4 327 47.7
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.0e-62 243.0 329 47.7
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 2.7e-62 242.7 328 47.3
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.7e-62 242.7 310 51.3
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 4.5e-62 241.9 327 48.9
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.9e-62 241.5 329 47.1
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.0e-61 240.7 363 46.3
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.3e-61 240.4 327 48.3
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.7e-61 240.0 326 48.2
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 1.7e-61 240.0 329 47.7
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.0e-61 238.4 327 48.6
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.6e-61 238.0 329 48.6
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.6e-59 233.4 327 48.0
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 2.6e-57 226.1 331 44.1
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 2.6e-57 226.1 331 44.1
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.4e-57 225.7 327 46.8
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 9.8e-57 224.2 304 47.7
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 6.4e-56 221.5 329 45.6
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.1e-55 220.7 451 37.9
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 2.4e-55 219.5 279 54.8
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.6e-54 216.9 328 43.9
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 5.9e-54 214.9 328 44.5
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 4.3e-52 208.8 330 43.3
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.8e-50 203.4 300 46.0
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 3.1e-50 202.6 329 41.3
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-49 200.3 281 45.9
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.7e-48 196.8 293 45.4
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 2.9e-48 196.1 315 43.5
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.1e-47 194.1 168 63.1
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.1e-47 194.1 373 40.2
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.1e-47 192.2 305 44.3
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.6e-46 190.3 330 40.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 2.7e-46 189.5 233 53.2
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 7.8e-46 188.0 277 43.7
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 3.6e-43 179.1 293 43.3
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 5.2e-42 175.3 165 57.6
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.2e-39 166.0 233 45.9
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 7.3e-36 154.8 179 49.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 4.0e-34 149.1 316 34.8
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.8e-34 148.3 177 55.4
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 5.8e-33 145.2 133 60.9
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.8e-33 145.2 324 32.1
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 7.6e-33 144.8 330 35.2
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 3.2e-31 139.4 130 60.8
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.7e-29 133.7 178 43.3
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-27 126.7 197 45.7
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-26 124.4 219 41.6
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 6.9e-26 121.7 220 41.4
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.3e-24 117.5 162 48.8
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-23 114.4 152 50.7
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.0e-21 107.8 155 43.2
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.5e-20 104.0 64 79.7
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.5e-20 104.0 64 79.7
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.1e-19 100.1 62 77.4
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 3.4e-17 92.8 67 70.1
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 9.9e-17 91.3 64 75.0
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.3e-16 90.9 88 59.1
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 3.8e-16 89.4 96 55.2
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 4.2e-15 85.9 74 66.2
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.2e-14 84.3 52 78.8
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.8e-13 80.5 56 73.2
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.3e-11 74.3 339 24.5
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 7.6e-09 65.1 95 46.3
A10p19460 Brassica napus HOM05D004483 ORTHO05D101033 1.7e-08 63.9 84 51.2
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.2e-08 63.5 36 83.3


User provided reference genes

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