Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 2.3e-48 195.3 100 100.0
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 2.3e-48 195.3 100 100.0
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.9e-42 175.6 111 86.5
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 7.1e-42 173.7 111 85.6
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.2e-41 172.9 111 84.7
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 2.1e-41 172.2 111 85.6
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.7e-40 169.1 111 83.8
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 3.9e-40 167.9 113 83.2
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 3.9e-40 167.9 107 83.2
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 3.9e-40 167.9 113 83.2
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 3.9e-40 167.9 85 98.8
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 3.9e-40 167.9 111 82.9
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 6.6e-40 167.2 109 84.4
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 8.6e-40 166.8 110 83.6
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 1.1e-39 166.4 107 82.2
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 1.5e-39 166.0 112 83.9
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 2.5e-39 165.2 109 81.7
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 5.6e-39 164.1 113 80.5
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 9.5e-39 163.3 106 82.1
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 2.1e-38 162.2 107 81.3
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 6.2e-38 160.6 107 79.4
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 8.1e-38 160.2 108 79.6
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 3.1e-37 158.3 109 78.9
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.2e-36 156.4 109 78.9
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 2.4e-29 132.1 108 71.3
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 1.6e-25 119.4 108 68.5
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 6.6e-24 114.0 102 66.7
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 3.5e-17 91.7 107 54.2
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 6.0e-17 90.9 108 51.9
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.3e-16 89.7 110 52.7
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 1.3e-16 89.7 109 54.1
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 2.3e-16 89.0 94 54.3
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.9e-16 88.2 96 52.1
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 3.9e-16 88.2 93 54.8
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 3.9e-16 88.2 83 57.8
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 3.9e-16 88.2 83 57.8
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 5.1e-16 87.8 98 53.1
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 6.7e-16 87.4 110 52.7
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 6.7e-16 87.4 101 52.5
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 8.7e-16 87.0 91 53.8
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.1e-15 86.7 93 52.7
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.5e-15 86.3 91 54.9
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.9e-15 85.9 72 66.7
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.9e-15 85.9 107 51.4
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.9e-15 85.9 95 53.7
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 2.5e-15 85.5 100 52.0
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 2.5e-15 85.5 91 54.9
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 4.3e-15 84.7 94 53.2
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 5.6e-15 84.3 92 52.2
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 5.6e-15 84.3 101 51.5
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 7.4e-15 84.0 89 51.7
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 9.6e-15 83.6 66 66.7
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 1.3e-14 83.2 86 55.8
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 2.8e-14 82.0 110 48.2
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 6.2e-14 80.9 95 53.7
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 6.2e-14 80.9 94 55.3
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 6.2e-14 80.9 81 51.9
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 8.1e-14 80.5 100 47.0
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 8.1e-14 80.5 93 49.5
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.1e-13 80.1 93 50.5
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 1.8e-13 79.3 75 60.0
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.8e-13 79.3 75 60.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.4e-13 79.0 97 49.5
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 3.1e-13 78.6 65 63.1
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 5.3e-13 77.8 116 44.8
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 5.3e-13 77.8 86 53.5
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 6.9e-13 77.4 99 48.5
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 6.9e-13 77.4 65 61.5
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 6.9e-13 77.4 75 58.7
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 9.0e-13 77.0 81 53.1
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 9.0e-13 77.0 110 45.5
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 1.2e-12 76.6 108 48.1
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 1.2e-12 76.6 120 43.3
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.2e-12 76.6 99 45.5
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.5e-12 76.3 86 53.5
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.5e-12 76.3 94 48.9
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 1.5e-12 76.3 82 53.7
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 1.5e-12 76.3 108 50.0
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.0e-12 75.9 116 44.8
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 2.6e-12 75.5 110 46.4
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 3.4e-12 75.1 86 48.8
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 4.5e-12 74.7 85 51.8
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 4.5e-12 74.7 83 54.2
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 4.5e-12 74.7 115 42.6
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 5.8e-12 74.3 103 47.6
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 5.8e-12 74.3 106 45.3
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 5.8e-12 74.3 89 50.6
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 7.6e-12 73.9 48 75.0
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 7.6e-12 73.9 115 43.5
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.0e-11 73.6 71 53.5
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 1.3e-11 73.2 92 48.9
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.3e-11 73.2 69 56.5
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 1.3e-11 73.2 82 52.4
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.7e-11 72.8 71 53.5
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 1.7e-11 72.8 71 53.5
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 1.7e-11 72.8 63 57.1
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 1.7e-11 72.8 56 62.5
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 1.7e-11 72.8 61 63.9
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 6.5e-11 70.9 83 49.4
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 8.4e-11 70.5 96 45.8
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 8.4e-11 70.5 113 41.6
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 1.4e-10 69.7 85 54.1
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 1.4e-10 69.7 87 47.1
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 4.2e-10 68.2 82 51.2
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 2.1e-09 65.9 47 63.8
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 6.0e-09 64.3 58 56.9
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.6e-06 56.2 61 52.5
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 8.2e-06 53.9 56 53.6


User provided reference genes

Program Settings