Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59170 Brassica napus HOM05D019723 ORTHO05D020024 1.8e-61 239.2 128 100.0
BcaC06g35134 Brassica carinata HOM05D019723 ORTHO05D020024 5.5e-23 111.3 160 49.4
BcaB06g27267 Brassica carinata HOM05D001657 ORTHO05D001557 1.0e-13 80.5 84 57.1
BcaB06g27268 Brassica carinata HOM05D001657 ORTHO05D001557 1.0e-13 80.5 84 57.1
BolC5t30021H Brassica oleracea HOM05D000290 ORTHO05D007356 6.8e-13 77.8 39 97.4
BolC8t47473H Brassica oleracea HOM05D000290 ORTHO05D007356 2.6e-12 75.9 39 94.9
BraA01t01467Z Brassica rapa HOM05D019723 ORTHO05D020024 2.6e-12 75.9 40 100.0
BcaB01g05718 Brassica carinata HOM05D000290 ORTHO05D007356 2.2e-11 72.8 39 89.7
Thhalv10013198m.g Eutrema salsugineum HOM05D000290 ORTHO05D007356 2.2e-11 72.8 39 89.7
Sp6g37630 Schrenkiella parvula HOM05D000290 ORTHO05D007356 2.2e-11 72.8 39 89.7
BcaB01g05943 Brassica carinata HOM05D000290 ORTHO05D007356 8.3e-11 70.9 37 91.9
A03p02240 Brassica napus HOM05D000290 ORTHO05D007356 8.3e-11 70.9 37 91.9
C03p02580 Brassica napus HOM05D000290 ORTHO05D007356 8.3e-11 70.9 37 91.9
BolC3t12810H Brassica oleracea HOM05D000290 ORTHO05D007356 8.3e-11 70.9 37 91.9
BraA03t09588Z Brassica rapa HOM05D000290 ORTHO05D007356 8.3e-11 70.9 37 91.9
BcaC06g32229 Brassica carinata HOM05D000290 ORTHO05D007356 1.1e-10 70.5 39 87.2
A10p30990 Brassica napus HOM05D000290 ORTHO05D007356 1.1e-10 70.5 39 87.2
C09p71500 Brassica napus HOM05D000290 ORTHO05D007356 1.1e-10 70.5 39 87.2
BolC9t59913H Brassica oleracea HOM05D000290 ORTHO05D007356 1.1e-10 70.5 39 87.2
BraA10t45144Z Brassica rapa HOM05D000290 ORTHO05D007356 1.1e-10 70.5 39 87.2
CARHR208040 Cardamine hirsuta HOM05D000290 ORTHO05D007356 1.4e-10 70.1 39 84.6
AT5G05200 Arabidopsis thaliana HOM05D000290 ORTHO05D007356 2.0e-09 66.2 39 79.5
Carub.0006s0413 Capsella rubella HOM05D000290 ORTHO05D007356 2.7e-09 65.9 39 79.5
Aa31LG11G6040 Aethionema arabicum HOM05D000290 ORTHO05D007356 3.5e-09 65.5 41 80.5
AL6G15040 Arabidopsis lyrata HOM05D000290 ORTHO05D007356 4.5e-09 65.1 39 76.9
Duzib114G0405 Durio zibethinus HOM05D000290 ORTHO05D007356 1.0e-08 63.9 39 74.4
THA.LOC104823168 Tarenaya hassleriana HOM05D000290 ORTHO05D007356 1.0e-08 63.9 39 76.9
GSVIVG01032656001 Vitis vinifera HOM05D000290 ORTHO05D007356 1.0e-08 63.9 39 76.9
Medtr5g068050 Medicago truncatula HOM05D000290 ORTHO05D007356 2.2e-08 62.8 39 74.4
Nitab4.5_0000171g0290 Nicotiana tabacum HOM05D000290 ORTHO05D007356 2.2e-08 62.8 40 75.0
COL.COLO4_19476 Corchorus olitorius HOM05D000290 ORTHO05D007356 2.9e-08 62.4 39 74.4
Duzib128G1704 Durio zibethinus HOM05D000290 ORTHO05D007356 2.9e-08 62.4 39 74.4
Sc10g0003060 Simmondsia chinensis HOM05D000290 ORTHO05D007356 2.9e-08 62.4 37 78.4
C08p06280 Brassica napus HOM05D019723 ORTHO05D020024 3.8e-08 62.0 43 81.4
BolC5t30022H Brassica oleracea HOM05D019723 ORTHO05D020024 3.8e-08 62.0 43 81.4
BolC8t47474H Brassica oleracea HOM05D019723 ORTHO05D020024 3.8e-08 62.0 43 81.4
CANSAT56G2455 Cannabis sativa HOM05D000290 ORTHO05D007356 3.8e-08 62.0 39 76.9
Eucgr.G03148 Eucalyptus grandis HOM05D000290 ORTHO05D007356 3.8e-08 62.0 39 74.4
Aqoxy4G03280 Aquilegia oxysepala HOM05D000290 ORTHO05D007356 5.0e-08 61.6 39 74.4
CiPaw.01G307500 Carya illinoinensis HOM05D000290 ORTHO05D007356 5.0e-08 61.6 39 74.4
CsaV3_5G011120 Cucumis sativus L. HOM05D000290 ORTHO05D007356 5.0e-08 61.6 39 74.4
Potri.019G061300 Populus trichocarpa HOM05D000290 ORTHO05D007356 5.0e-08 61.6 39 74.4
Prupe.2G265700 Prunus persica HOM05D000290 ORTHO05D007356 5.0e-08 61.6 39 74.4
QL08p065093 Quercus lobata HOM05D000290 ORTHO05D007356 5.0e-08 61.6 39 74.4
Rhsim03G0153700 Rhododendron simsii HOM05D000290 ORTHO05D007356 5.0e-08 61.6 38 76.3
vmacro06903 Vaccinium macrocarpon HOM05D000290 ORTHO05D007356 5.0e-08 61.6 38 76.3
Manes.07G142100 Manihot esculenta HOM05D000290 ORTHO05D007356 6.5e-08 61.2 39 74.4
Thecc.10G185100 Theobroma cacao HOM05D000290 ORTHO05D007356 6.5e-08 61.2 39 74.4
TPR.G33928 Trifolium pratense HOM05D000290 ORTHO05D007356 6.5e-08 61.2 39 71.8
Haze_17371 Corylus avellana HOM05D000290 ORTHO05D007356 8.5e-08 60.8 39 74.4
Dinv34498 Davidia involucrata HOM05D000290 ORTHO05D007356 8.5e-08 60.8 39 74.4
Zm00001eb303700 Zea mays HOM05D000290 ORTHO05D007356 8.5e-08 60.8 39 69.2
AUR62024948 Chenopodium quinoa HOM05D000290 ORTHO05D007356 1.1e-07 60.5 37 73.0
MELO3C020171.2 Cucumis melo HOM05D000290 ORTHO05D007356 1.1e-07 60.5 38 73.7
Gohir.A05G404300 Gossypium hirsutum HOM05D000290 ORTHO05D007356 1.1e-07 60.5 39 71.8
Gohir.D04G011400 Gossypium hirsutum HOM05D000290 ORTHO05D007356 1.1e-07 60.5 39 71.8
Gorai.012G013600 Gossypium raimondii HOM05D000290 ORTHO05D007356 1.1e-07 60.5 39 71.8
Hma1.2p1_1805F.1_g303140 Hydrangea macrophylla HOM05D000290 ORTHO05D007356 1.1e-07 60.5 39 71.8
Os07g0227800 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D007356 1.1e-07 60.5 39 69.2
PGR142G4431 Punica granatum HOM05D000290 ORTHO05D007356 1.1e-07 60.5 39 71.8
ClCG07G005270 Citrullus lanatus HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
Ciclev10031187m.g Citrus clementina HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
FvH4_7g26150 Fragaria vesca HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
FAN01G0461 Fragaria x ananassa HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
FAN06G0462 Fragaria x ananassa HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
FAN10G3915 Fragaria x ananassa HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
LjContig00408g0018075 Lotus japonicus HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
Peaxi162Scf00073g02224 Petunia axillaris HOM05D000290 ORTHO05D007356 1.5e-07 60.1 34 82.4
Sabra19G0075100 Salix brachista HOM05D000290 ORTHO05D007356 1.5e-07 60.1 39 71.8
Solyc03g095620.4 Solanum lycopersicum HOM05D000290 ORTHO05D007356 1.5e-07 60.1 34 82.4
Sopen03g025570 Solanum pennellii HOM05D000290 ORTHO05D007356 1.5e-07 60.1 34 82.4
PGSC0003DMG400022947 Solanum tuberosum HOM05D000290 ORTHO05D007356 1.5e-07 60.1 34 82.4
SGA_v2.0_scaffold160G37737 Striga asiatica HOM05D000290 ORTHO05D007356 1.5e-07 60.1 34 82.4
Cfa001193 Carpinus fangiana HOM05D000290 ORTHO05D007356 1.9e-07 59.7 39 71.8
PSO017G3158 Papaver somniferum HOM05D000290 ORTHO05D007356 1.9e-07 59.7 41 65.9
PSO170G6016 Papaver somniferum HOM05D000290 ORTHO05D007356 1.9e-07 59.7 41 65.9
TWI09G1541 Tripterygium wilfordii HOM05D000290 ORTHO05D007356 1.9e-07 59.7 39 69.2
ECA238G2935 Erigeron canadensis HOM05D000290 ORTHO05D007356 2.5e-07 59.3 39 69.2
HanXRQChr14g0460511 Helianthus annuus HOM05D000290 ORTHO05D007356 2.5e-07 59.3 39 69.2
MD01G1169500 Malus domestica HOM05D000290 ORTHO05D007356 2.5e-07 59.3 39 69.2
MD07G1235400 Malus domestica HOM05D000290 ORTHO05D007356 2.5e-07 59.3 39 66.7
Sed0001960 Sechium edule HOM05D000290 ORTHO05D007356 2.5e-07 59.3 39 71.8
Ah.12g064460 Amaranthus hybridus HOM05D000290 ORTHO05D007356 3.2e-07 58.9 37 73.0
RcHm_v2.0_Chr1g0372581 Rosa chinensis HOM05D000290 ORTHO05D007356 3.2e-07 58.9 39 69.2
Atru.chr12.193 Acer truncatum HOM05D000290 ORTHO05D007356 4.2e-07 58.5 42 66.7
Phvul.008G186400 Phaseolus vulgaris HOM05D000290 ORTHO05D007356 4.2e-07 58.5 39 69.2
Actinidia01008 Actinidia chinensis HOM05D000290 ORTHO05D007356 5.5e-07 58.2 39 66.7
EL10Ac2g02669 Beta vulgaris HOM05D000290 ORTHO05D007356 5.5e-07 58.2 37 70.3
CSS0016279 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007356 5.5e-07 58.2 39 71.8
CSS0037983 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007356 5.5e-07 58.2 39 71.8
Cc02_g05200 Coffea canephora HOM05D000290 ORTHO05D007356 5.5e-07 58.2 31 87.1
Glyma.14G186700 Glycine max HOM05D000290 ORTHO05D007356 5.5e-07 58.2 39 69.2
AUR62030591 Chenopodium quinoa HOM05D000290 ORTHO05D007356 7.2e-07 57.8 37 70.3
Lalb_Chr10g0102831 Lupinus albus HOM05D000290 ORTHO05D007356 7.2e-07 57.8 39 66.7
Psat2g061840 Pisum sativum HOM05D000290 ORTHO05D007356 7.2e-07 57.8 39 66.7
CAN.G1229.6 Capsicum annuum HOM05D000290 ORTHO05D007356 9.4e-07 57.4 32 81.2
Lsat_1_v5_gn_2_126721 Lactuca sativa HOM05D000290 ORTHO05D007356 9.4e-07 57.4 32 78.1
ATR1127G020 Amborella trichopoda HOM05D000290 ORTHO05D007356 1.2e-06 57.0 39 66.7
arahy.Tifrunner.gnm1.ann1.FMIL5U Arachis hypogaea HOM05D000290 ORTHO05D007356 1.2e-06 57.0 34 76.5
arahy.Tifrunner.gnm1.ann1.S15XUX Arachis hypogaea HOM05D000290 ORTHO05D007356 1.2e-06 57.0 34 76.5
Migut.F01231 Erythranthe guttata HOM05D000290 ORTHO05D007356 1.6e-06 56.6 33 78.8
Ca_23242_v3 Cicer arietinum L. HOM05D000290 ORTHO05D007356 2.1e-06 56.2 39 69.2
Lj8A52T21 Lonicera japonica HOM05D000290 ORTHO05D007356 2.1e-06 56.2 39 69.2
Glyma.02G219267 Glycine max HOM05D000290 ORTHO05D007356 2.7e-06 55.8 39 66.7
TAR623G1031 Trochodendron aralioides HOM05D000290 ORTHO05D007356 4.7e-06 55.1 39 69.2
Oeu039386.1 Olea europaea HOM05D000290 ORTHO05D007356 6.1e-06 54.7 34 73.5
unitig_90.g27551 Utricularia gibba HOM05D000290 ORTHO05D007356 8.0e-06 54.3 32 78.1


User provided reference genes

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