Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 0.0e+00 1109.0 572 100.0
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 3.5e-303 1044.3 556 97.5
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 4.3e-301 1037.3 548 97.3
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 8.9e-299 1029.6 561 94.8
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 6.4e-289 996.9 557 93.7
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.6e-266 921.8 555 85.6
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 2.9e-265 918.3 559 84.8
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 6.5e-265 917.1 554 85.4
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 3.2e-264 914.8 570 84.0
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 4.6e-263 911.0 558 84.4
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 5.7e-261 904.0 553 83.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 9.0e-259 896.7 549 84.3
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 1.0e-257 893.3 549 84.0
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 1.7e-257 892.5 546 83.7
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 3.6e-255 884.8 550 83.5
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 3.6e-255 884.8 550 83.5
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 1.1e-240 836.6 562 77.0
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 1.4e-240 836.3 554 82.1
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 1.4e-235 819.7 554 75.1
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 8.9e-214 747.3 559 68.3
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 7.5e-213 744.2 561 67.6
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 4.9e-212 741.5 560 68.0
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 1.6e-210 736.5 559 67.3
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 1.0e-209 733.8 556 67.4
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.9e-208 729.6 561 66.3
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 7.3e-208 727.6 559 65.3
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 9.5e-208 727.2 561 66.7
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.2e-207 726.9 561 66.7
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 8.0e-207 724.2 559 65.1
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 1.0e-206 723.8 560 66.6
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 3.1e-206 722.2 559 65.3
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 6.8e-206 721.1 559 66.2
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.2e-205 720.3 559 66.0
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 3.4e-205 718.8 562 65.5
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.4e-205 718.8 559 65.8
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.4e-205 718.4 559 65.7
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 9.8e-205 717.2 559 65.7
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.3e-204 716.8 552 65.8
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 3.7e-204 715.3 552 65.2
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 8.3e-204 714.1 578 63.0
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.1e-203 713.8 558 65.9
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.9e-203 713.0 557 64.8
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 4.1e-203 711.8 557 65.5
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 4.1e-203 711.8 557 65.5
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 5.4e-203 711.4 557 65.7
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.0e-203 711.1 561 64.3
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 7.0e-203 711.1 561 65.2
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 9.2e-203 710.7 558 65.2
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 1.6e-202 709.9 552 65.0
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 2.7e-202 709.1 554 65.2
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 4.6e-202 708.4 559 65.5
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 6.0e-202 708.0 559 65.5
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 6.6e-201 704.5 536 67.0
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.9e-200 703.0 559 65.7
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.9e-200 703.0 558 65.8
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 1.2e-199 700.3 559 64.9
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 2.1e-199 699.5 553 65.3
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 2.8e-199 699.1 557 64.6
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 8.0e-199 697.6 557 64.1
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 8.0e-199 697.6 571 64.4
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.4e-198 696.8 580 61.9
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.1e-198 695.7 566 62.7
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 6.8e-198 694.5 559 64.6
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 6.8e-198 694.5 560 65.9
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 8.9e-198 694.1 559 64.9
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 8.9e-198 694.1 559 64.9
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.2e-197 693.7 560 65.9
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.5e-197 693.3 558 63.6
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.5e-197 693.3 557 63.0
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 4.4e-197 691.8 559 65.3
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 4.4e-197 691.8 554 64.8
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 5.8e-197 691.4 558 64.2
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 5.8e-197 691.4 590 63.6
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 7.5e-197 691.0 559 64.0
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 9.8e-197 690.6 554 64.6
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 9.8e-197 690.6 560 64.8
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 1.7e-196 689.9 557 63.6
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.7e-196 689.9 558 63.4
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 3.7e-196 688.7 558 63.4
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 4.9e-196 688.3 557 62.3
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 4.9e-196 688.3 584 61.6
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.1e-195 687.2 583 60.0
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.9e-195 686.4 557 62.7
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 4.1e-195 685.3 575 61.9
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 5.4e-195 684.9 552 64.3
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 5.4e-195 684.9 585 61.7
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 1.6e-194 683.3 559 63.1
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 2.7e-194 682.6 581 61.4
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 7.8e-194 681.0 560 63.6
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.7e-193 679.9 558 62.7
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 4.0e-190 668.7 530 66.0
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 4.0e-190 668.7 566 62.4
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.6e-189 666.0 558 61.5
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.4e-189 665.2 558 62.5
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 9.9e-189 664.1 533 65.9
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 4.1e-187 658.7 562 61.0
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 5.4e-187 658.3 565 61.2
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 4.6e-186 655.2 524 64.1
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 6.0e-186 654.8 516 66.3
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 8.6e-185 651.0 564 60.6
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 1.5e-181 640.2 494 66.0
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 8.4e-180 634.4 561 60.6
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 8.4e-180 634.4 549 61.4
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.4e-179 633.6 545 59.6
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 2.3e-177 626.3 535 58.3
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 3.3e-176 622.5 497 66.2
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 3.6e-175 619.0 554 59.7
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 8.1e-175 617.8 492 63.8
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 8.1e-175 617.8 497 63.2
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.2e-173 614.0 551 56.4
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 3.2e-163 579.3 547 56.3
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 3.2e-155 552.7 425 66.1
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 3.3e-152 542.7 548 52.9
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 2.1e-151 540.0 571 52.2
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 3.1e-150 536.2 566 52.5
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 3.2e-147 526.2 563 50.4
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 1.8e-145 520.4 506 55.7
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 2.3e-145 520.0 441 61.0
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.0e-140 504.6 538 51.7
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 9.7e-136 488.0 461 56.2
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 6.3e-135 485.3 407 59.2
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 6.5e-132 475.3 401 63.3
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 2.6e-128 463.4 358 66.5
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 1.7e-124 450.7 527 49.3
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 4.4e-112 409.5 408 54.2
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 2.9e-108 396.7 583 41.3
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 2.7e-101 373.6 294 65.6
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 4.4e-96 356.3 536 40.9
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 6.3e-95 352.4 559 41.7
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.1e-94 351.7 283 63.6
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 2.8e-66 257.3 202 63.4
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 3.0e-60 237.3 479 35.7
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 3.1e-57 227.3 157 75.2
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 3.5e-53 213.8 277 45.1
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 9.6e-51 205.7 363 39.9
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 3.2e-46 190.7 101 96.0
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 2.6e-40 171.0 143 65.0
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.7e-37 161.0 259 39.4
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 7.9e-37 159.5 143 62.2
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 6.2e-34 149.8 189 49.2
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.1e-30 139.0 86 80.2
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 2.1e-29 134.8 111 60.4
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 1.3e-26 125.6 108 59.3
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.4e-25 122.1 91 69.2
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.3e-25 120.2 160 43.8
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 7.4e-19 99.8 76 59.2
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.7e-18 98.6 84 58.3
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 5.9e-16 90.1 201 31.3
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 1.9e-14 85.1 85 56.5
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.5e-11 75.5 74 51.4


User provided reference genes

Program Settings