Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 6.9e-209 730.3 352 100.0
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 6.5e-207 723.8 352 99.1
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 2.7e-205 718.4 353 98.0
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 3.0e-196 688.3 348 95.1
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 9.7e-195 683.3 346 94.8
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 8.2e-194 680.2 346 94.5
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 4.2e-190 667.9 353 90.7
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 2.5e-187 658.7 352 89.8
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 1.7e-186 656.0 354 89.5
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 4.5e-184 647.9 354 88.4
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 5.9e-184 647.5 352 87.8
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 1.0e-180 636.7 354 86.4
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 9.1e-169 597.0 387 77.5
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 2.7e-160 568.9 350 78.3
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.5e-147 526.6 344 70.3
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.7e-146 523.1 343 70.3
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.2e-146 522.7 344 70.1
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 3.7e-146 521.9 343 70.8
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 8.3e-146 520.8 352 68.8
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 4.6e-144 515.0 343 69.4
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 4.6e-144 515.0 335 71.9
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 5.6e-142 508.1 338 69.5
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 7.3e-142 507.7 343 68.5
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 2.8e-141 505.8 344 67.4
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 3.6e-141 505.4 340 68.2
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 8.0e-141 504.2 340 68.2
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 1.4e-140 503.4 341 68.6
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 1.4e-140 503.4 356 64.3
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 3.1e-140 502.3 336 68.5
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 3.1e-140 502.3 332 68.7
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 2.0e-139 499.6 341 67.4
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 4.9e-138 495.0 334 69.5
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 8.3e-138 494.2 339 67.6
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.1e-137 493.8 334 68.9
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 2.0e-136 489.6 335 68.1
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 7.8e-136 487.6 340 65.9
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 7.8e-136 487.6 342 65.8
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 1.3e-135 486.9 336 67.9
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 1.7e-135 486.5 332 66.9
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 1.7e-135 486.5 339 67.6
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 3.0e-135 485.7 337 67.7
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 6.6e-135 484.6 342 65.8
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 8.6e-135 484.2 335 65.7
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 2.5e-134 482.6 339 65.8
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 5.6e-134 481.5 334 66.2
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 2.8e-133 479.2 348 64.9
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 3.6e-133 478.8 355 63.7
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 1.4e-132 476.9 338 65.7
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.3e-132 476.1 338 66.0
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 2.3e-132 476.1 338 66.0
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 4.0e-132 475.3 343 63.6
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 4.0e-132 475.3 380 61.3
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 3.4e-131 472.2 332 65.7
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 7.5e-131 471.1 346 63.3
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 3.7e-130 468.8 343 62.4
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 3.7e-130 468.8 347 64.0
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 8.3e-130 467.6 331 64.4
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.1e-129 467.2 340 65.6
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 1.4e-129 466.8 335 63.6
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 1.4e-129 466.8 339 64.6
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 4.1e-129 465.3 341 62.2
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 7.1e-129 464.5 333 62.8
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 2.3e-127 459.5 341 63.0
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 3.9e-127 458.8 352 64.8
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 3.9e-127 458.8 332 61.7
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 3.9e-127 458.8 345 61.2
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.9e-126 456.4 332 61.1
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.9e-126 456.4 333 61.9
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.3e-126 455.7 335 62.7
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 4.3e-126 455.3 338 62.7
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 7.3e-126 454.5 333 62.2
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 7.3e-126 454.5 337 64.1
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 9.5e-126 454.1 335 62.4
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 9.5e-126 454.1 333 61.6
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 3.6e-125 452.2 338 62.1
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 1.4e-124 450.3 337 62.6
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 2.3e-124 449.5 334 61.4
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 4.0e-124 448.7 334 62.0
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 2.0e-123 446.4 337 63.8
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 3.4e-123 445.7 336 63.1
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 4.4e-123 445.3 331 61.3
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 4.4e-123 445.3 332 64.8
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.4e-123 445.3 332 64.8
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 5.8e-123 444.9 336 62.8
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.9e-123 444.1 332 64.5
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 9.9e-123 444.1 336 61.3
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 9.9e-123 444.1 338 59.5
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 3.2e-121 439.1 344 57.3
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.1e-121 438.0 332 64.5
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.1e-121 438.0 332 64.2
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.5e-118 430.3 332 62.7
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 3.6e-117 425.6 375 58.7
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 5.2e-116 421.8 330 58.2
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 2.7e-112 409.5 336 59.2
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 6.0e-112 408.3 330 56.7
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 5.1e-111 405.2 333 56.8
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 1.9e-110 403.3 341 56.6
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 2.5e-110 402.9 334 56.6
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 6.2e-109 398.3 342 56.7
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 1.8e-108 396.7 333 57.1
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 6.9e-108 394.8 287 64.5
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 9.3e-105 384.4 441 46.7
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 9.3e-105 384.4 345 55.4
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 1.7e-103 380.2 336 53.0
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 2.1e-101 373.2 262 63.4
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 2.0e-99 366.7 343 50.7
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 2.6e-91 339.7 261 60.9
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.9e-89 333.6 289 57.1
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 9.3e-89 331.3 258 60.1
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 1.2e-88 330.9 244 58.6
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 6.3e-77 292.0 184 69.6
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 8.2e-77 291.6 183 69.9
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 1.5e-75 287.3 342 42.1
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.5e-73 280.0 340 41.8
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 6.5e-66 255.4 341 40.8
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.1e-62 244.6 203 61.6
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 7.2e-49 198.7 182 56.0
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.7e-48 196.8 197 55.3
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.6e-46 190.3 255 39.2
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.4e-46 189.9 166 57.2
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 4.4e-46 189.5 183 55.7
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.5e-41 174.5 175 54.9
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.7e-37 159.8 206 44.7
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 2.5e-25 120.6 81 61.7
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 3.1e-23 113.6 136 39.7
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 2.0e-19 100.9 127 39.4
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-15 88.6 60 68.3
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-15 88.6 60 68.3
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.1e-15 88.6 60 68.3
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 8.9e-15 85.5 60 66.7
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.1e-12 76.6 92 47.8
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 5.4e-12 76.3 104 41.3
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 9.2e-12 75.5 76 51.3
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 9.2e-12 75.5 76 51.3
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 1.2e-11 75.1 90 47.8
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 7.8e-11 72.4 72 51.4
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 7.8e-11 72.4 59 54.2
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.8e-08 63.9 56 53.6
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 8.1e-08 62.4 69 47.8
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 1.2e-06 58.5 89 37.1


User provided reference genes

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