Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 4.2e-119 431.4 222 100.0
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 8.7e-117 423.7 222 98.6
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.4e-114 415.6 218 98.2
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 2.4e-106 389.0 218 92.2
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.0e-105 386.0 218 91.7
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 2.6e-105 385.6 218 91.3
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.2e-104 382.5 219 90.4
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-100 370.2 218 89.0
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.1e-98 363.6 218 86.2
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.4e-98 363.2 218 88.1
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.4e-90 336.7 217 84.8
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.8e-90 336.3 202 88.1
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 2.4e-90 335.9 202 88.1
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 4.1e-90 335.1 202 88.1
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 5.3e-90 334.7 202 88.1
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 1.0e-88 330.5 218 83.5
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 2.2e-88 329.3 221 80.5
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 3.2e-87 325.5 218 80.7
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 2.3e-85 319.3 218 78.0
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.5e-84 316.6 218 78.9
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 2.4e-82 309.3 218 78.0
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 5.3e-74 281.6 237 70.0
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 2.9e-56 222.6 212 59.9
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 6.6e-56 221.5 237 58.6
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.5e-55 220.3 203 62.1
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.5e-55 220.3 203 62.1
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.5e-55 219.5 212 60.8
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 2.5e-55 219.5 212 60.8
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 5.6e-55 218.4 192 63.0
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.3e-55 218.0 212 59.9
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.3e-55 218.0 212 59.9
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.2e-54 217.2 190 62.1
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 1.6e-54 216.9 227 57.3
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.0e-53 214.2 230 57.4
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 1.0e-53 214.2 219 56.6
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.0e-53 214.2 220 56.8
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.8e-53 213.4 219 58.0
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 2.3e-53 213.0 188 62.8
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 2.3e-53 213.0 185 67.0
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 6.8e-53 211.5 223 56.1
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.2e-52 210.7 230 56.1
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.2e-52 210.7 215 59.1
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 1.2e-52 210.7 231 55.0
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 2.0e-52 209.9 183 62.3
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 3.4e-52 209.1 223 57.0
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 9.8e-52 207.6 225 56.0
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.3e-51 207.2 192 58.3
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 2.2e-51 206.5 229 55.0
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 2.9e-51 206.1 233 54.9
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 6.4e-51 204.9 194 58.8
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 8.3e-51 204.5 192 59.4
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 8.3e-51 204.5 213 55.9
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.4e-50 203.8 207 59.9
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 1.4e-50 203.8 211 56.4
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.8e-50 203.4 227 54.6
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 2.4e-50 203.0 226 55.3
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 3.2e-50 202.6 191 60.7
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 4.1e-50 202.2 220 55.0
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 7.0e-50 201.4 191 59.7
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.0e-50 201.4 239 53.6
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 9.2e-50 201.1 214 55.1
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 1.6e-49 200.3 207 58.5
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 2.7e-49 199.5 226 53.5
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.0e-48 197.6 202 54.5
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.7e-48 196.8 192 59.4
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 2.3e-48 196.4 211 53.6
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 3.0e-48 196.1 185 58.9
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 3.0e-48 196.1 226 55.8
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 3.0e-48 196.1 226 55.8
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.5e-47 193.7 235 52.3
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.5e-47 193.0 191 58.1
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.3e-47 192.6 201 57.2
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 5.6e-47 191.8 215 54.9
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 5.6e-47 191.8 232 50.9
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 7.3e-47 191.4 251 49.8
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 4.7e-46 188.7 186 55.9
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 6.2e-46 188.3 253 51.4
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 6.2e-46 188.3 181 55.2
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 1.0e-45 187.6 228 49.1
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 4.0e-45 185.7 230 49.1
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 5.2e-45 185.3 191 56.0
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 5.2e-45 185.3 192 54.7
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 8.9e-45 184.5 228 50.9
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 5.8e-44 181.8 194 55.7
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.7e-43 180.3 199 54.3
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 3.7e-43 179.1 223 48.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 8.3e-43 177.9 180 61.1
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 8.3e-43 177.9 188 51.6
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 8.3e-43 177.9 188 51.6
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 8.3e-43 177.9 188 52.1
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 5.4e-42 175.3 189 51.3
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 9.2e-42 174.5 233 46.4
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.6e-41 173.7 239 49.4
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 2.7e-41 172.9 181 55.8
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 7.8e-41 171.4 137 67.9
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.0e-40 171.0 130 66.9
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.3e-40 170.6 248 46.8
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.3e-40 169.9 227 49.3
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 2.3e-40 169.9 223 50.2
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 3.9e-40 169.1 249 45.4
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 3.9e-40 169.1 179 54.7
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.0e-40 168.7 139 66.2
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 6.6e-40 168.3 177 54.2
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 6.6e-40 168.3 180 57.2
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.5e-39 167.2 139 65.5
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 4.3e-39 165.6 136 66.9
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-37 161.0 90 91.1
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 1.8e-37 160.2 239 46.4
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 3.1e-37 159.5 176 53.4
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 4.4e-36 155.6 177 52.5
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 5.4e-34 148.7 182 48.9
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 1.3e-32 144.1 154 59.7
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.3e-32 144.1 121 65.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 5.1e-32 142.1 71 97.2
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 2.5e-31 139.8 122 65.6
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 5.6e-31 138.7 213 44.1
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 7.3e-31 138.3 164 55.5
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 6.2e-30 135.2 233 40.8
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 6.2e-30 135.2 124 59.7
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 2.3e-29 133.3 242 40.5
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 3.1e-29 132.9 181 48.6
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 4.0e-29 132.5 161 54.7
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 4.4e-28 129.0 136 60.3
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 1.1e-26 124.4 164 53.0
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.9e-26 123.6 226 40.3
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 5.1e-24 115.5 204 42.2
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 6.9e-21 105.1 72 70.8
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 5.6e-15 85.5 126 43.7
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 1.3e-14 84.3 79 64.6
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 4.0e-13 79.3 224 32.1
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 7.1e-10 68.6 110 41.8
BolC7t46413H Brassica oleracea HOM05D005104 ORTHO05D006614 2.7e-09 66.6 58 62.1
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.3e-08 64.3 146 39.0
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.3e-07 59.7 134 39.6
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 9.6e-07 58.2 111 37.8
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.6e-06 57.4 161 32.3
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 8.1e-06 55.1 203 28.1


User provided reference genes

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