Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p58280 Brassica napus HOM05D003598 ORTHO05D004198 3.8e-120 434.9 226 100.0
BcaB08g36681 Brassica carinata HOM05D003598 ORTHO05D004198 2.2e-83 312.8 199 86.9
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 2.3e-64 249.6 136 97.1
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 8.4e-59 231.1 190 70.5
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 1.3e-54 217.2 192 64.6
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 8.2e-54 214.5 172 70.9
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 8.2e-54 214.5 190 65.3
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 3.9e-48 195.7 173 62.4
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 3.9e-48 195.7 173 62.4
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 3.9e-48 195.7 173 62.4
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 1.9e-47 193.4 137 74.5
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 3.1e-45 186.0 167 62.9
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.2e-44 184.1 141 69.5
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 2.6e-44 183.0 201 53.7
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 2.9e-43 179.5 172 61.0
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 7.2e-42 174.9 140 69.3
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 4.6e-41 172.2 140 67.9
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 1.8e-40 170.2 172 60.5
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 3.0e-40 169.5 140 66.4
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 9.1e-37 157.9 139 60.4
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 2.9e-35 152.9 138 58.0
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 1.5e-23 114.0 125 45.6
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 2.8e-22 109.8 133 42.9
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 3.7e-22 109.4 125 44.0
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 3.7e-22 109.4 125 45.6
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 3.7e-22 109.4 133 42.1
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 8.2e-22 108.2 138 40.6
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 1.4e-21 107.5 125 43.2
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 4.1e-21 105.9 123 41.5
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 7.0e-21 105.1 128 45.3
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 1.2e-20 104.4 129 43.4
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 2.0e-20 103.6 133 42.1
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.7e-20 103.2 138 41.3
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 7.7e-20 101.7 129 44.2
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.7e-19 100.5 119 46.2
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.7e-19 100.5 115 44.3
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 2.2e-19 100.1 124 41.1
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 3.8e-19 99.4 123 40.7
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 3.8e-19 99.4 128 41.4
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 6.5e-19 98.6 130 40.0
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 6.5e-19 98.6 140 42.1
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 8.5e-19 98.2 122 44.3
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 1.1e-18 97.8 133 41.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.1e-18 97.8 119 45.4
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 2.5e-18 96.7 166 36.1
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 2.5e-18 96.7 130 39.2
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 3.2e-18 96.3 130 40.8
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 3.2e-18 96.3 140 37.9
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 4.2e-18 95.9 114 44.7
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 5.5e-18 95.5 130 38.5
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 5.5e-18 95.5 130 37.7
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 5.5e-18 95.5 130 37.7
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 2.1e-17 93.6 114 43.0
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 2.7e-17 93.2 141 38.3
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.6e-17 92.8 120 37.5
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 3.6e-17 92.8 129 40.3
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 3.6e-17 92.8 163 36.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.7e-17 92.4 98 49.0
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 8.0e-17 91.7 125 41.6
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 8.0e-17 91.7 130 37.7
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.0e-16 91.3 133 39.1
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.0e-16 91.3 129 37.2
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 1.8e-16 90.5 130 36.2
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 1.8e-16 90.5 177 33.3
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 3.0e-16 89.7 126 40.5
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 3.0e-16 89.7 120 39.2
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 4.0e-16 89.4 125 40.0
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 4.0e-16 89.4 117 42.7
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 4.0e-16 89.4 144 34.7
Lsat_1_v5_gn_6_87320 Lactuca sativa HOM05D003598 ORTHO05D009814 4.0e-16 89.4 144 34.0
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 4.0e-16 89.4 125 38.4
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 5.2e-16 89.0 129 39.5
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 6.8e-16 88.6 126 38.9
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 1.2e-15 87.8 129 38.8
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 1.5e-15 87.4 129 38.0
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.0e-15 87.0 124 39.5
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 2.0e-15 87.0 92 42.4
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.6e-15 86.7 129 38.8
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 4.4e-15 85.9 98 45.9
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 7.5e-15 85.1 121 36.4
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 7.5e-15 85.1 131 38.2
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 7.5e-15 85.1 133 37.6
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 9.8e-15 84.7 122 34.4
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 9.8e-15 84.7 168 37.5
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 1.7e-14 84.0 133 35.3
Cc08_g04950 Coffea canephora HOM05D003598 ORTHO05D004198 2.2e-14 83.6 93 45.2
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 2.2e-14 83.6 115 39.1
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 3.7e-14 82.8 121 37.2
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 4.8e-14 82.4 115 39.1
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 8.3e-14 81.6 132 35.6
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 1.4e-13 80.9 115 40.0
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.4e-13 80.9 129 38.8
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.8e-13 80.5 167 34.1
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 2.4e-13 80.1 122 36.1
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 2.4e-13 80.1 133 36.8
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.1e-13 79.7 121 38.0
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 5.4e-13 79.0 171 37.4
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 7.0e-13 78.6 117 38.5
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 7.0e-13 78.6 142 33.8
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 9.1e-13 78.2 113 36.3
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 9.1e-13 78.2 123 35.8
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.2e-12 77.8 167 33.5
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 1.2e-12 77.8 122 37.7
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.2e-12 77.8 124 37.1
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 1.6e-12 77.4 118 36.4
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.6e-12 77.4 123 36.6
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.6e-12 77.4 121 36.4
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 2.0e-12 77.0 102 39.2
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 3.5e-12 76.3 133 37.6
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 5.9e-12 75.5 110 39.1
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 7.7e-12 75.1 138 35.5
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 7.7e-12 75.1 176 29.5
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 7.7e-12 75.1 115 37.4
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.0e-11 74.7 167 35.3
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 1.0e-11 74.7 122 36.1
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.7e-11 73.9 128 35.2
BcaC03g13595 Brassica carinata HOM05D003598 ORTHO05D004198 2.9e-11 73.2 50 68.0
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.9e-11 73.2 118 34.7
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 2.9e-11 73.2 168 31.0
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.8e-11 72.8 167 34.1
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.8e-11 72.8 167 34.7
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 3.8e-11 72.8 81 46.9
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.8e-11 72.8 137 33.6
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 5.0e-11 72.4 137 32.8
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.1e-10 71.2 120 38.3
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.1e-10 71.2 136 33.1
Actinidia24399 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.9e-10 70.5 86 44.2
QL09p042102 Quercus lobata HOM05D003598 ORTHO05D004198 1.9e-10 70.5 114 38.6
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 2.5e-10 70.1 119 37.8
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 4.2e-10 69.3 171 33.9
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.2e-10 69.3 138 33.3
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 7.2e-10 68.6 121 36.4
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 7.2e-10 68.6 117 34.2
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 7.2e-10 68.6 107 40.2
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 9.4e-10 68.2 131 34.4
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.2e-09 67.8 118 37.3
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.2e-09 67.8 138 32.6
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.2e-09 67.8 138 32.6
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 3.6e-09 66.2 187 28.3
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 4.7e-09 65.9 151 31.8
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 1.8e-08 63.9 109 36.7
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 3.0e-08 63.2 73 42.5
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 4.0e-08 62.8 124 34.7
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 4.0e-08 62.8 71 40.8
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 4.0e-08 62.8 77 39.0
BcaB03g16824 Brassica carinata HOM05D003598 ORTHO05D092120 8.8e-08 61.6 42 69.0
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.5e-07 60.8 116 36.2
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 2.6e-07 60.1 173 27.7
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 1.3e-06 57.8 138 30.4
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 8.3e-06 55.1 151 27.2


User provided reference genes

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