Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 4.5e-240 834.3 463 100.0
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 1.5e-224 782.7 467 92.7
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 1.4e-214 749.6 467 92.1
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 5.2e-196 688.0 470 86.4
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 3.5e-168 595.5 447 79.2
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 8.7e-127 458.0 264 97.3
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 2.0e-123 446.8 510 59.6
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 1.8e-119 433.7 505 59.8
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 9.3e-113 411.4 455 58.9
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 1.9e-110 403.7 489 56.4
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 2.4e-108 396.7 485 58.4
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 1.0e-98 364.8 534 51.5
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 3.2e-97 359.8 477 54.1
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 4.7e-72 276.2 465 46.2
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 6.1e-72 275.8 423 50.1
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.1e-68 265.0 540 42.6
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 8.0e-48 195.7 296 44.3
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 2.3e-42 177.6 382 38.7
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 1.6e-40 171.4 405 36.8
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 9.8e-38 162.2 395 35.9
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 8.3e-37 159.1 398 35.2
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 1.1e-36 158.7 221 45.7
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 1.1e-36 158.7 320 36.6
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 2.4e-36 157.5 362 37.8
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 3.2e-36 157.1 430 34.9
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 5.4e-36 156.4 437 36.4
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.1e-35 154.5 427 35.4
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 2.1e-35 154.5 434 35.5
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 2.1e-35 154.5 408 35.3
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 2.7e-35 154.1 348 37.1
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 3.5e-35 153.7 378 35.7
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 6.0e-35 152.9 323 38.4
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 6.0e-35 152.9 405 36.0
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 7.8e-35 152.5 319 36.1
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 1.3e-34 151.8 297 40.7
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 8.6e-34 149.1 392 37.0
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 1.1e-33 148.7 452 36.1
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 2.5e-33 147.5 324 38.6
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 5.6e-33 146.4 402 34.6
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 9.5e-33 145.6 415 35.4
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 1.2e-32 145.2 200 47.0
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 2.1e-32 144.4 397 36.0
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 2.1e-32 144.4 399 34.1
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 2.8e-32 144.1 395 34.4
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 8.1e-32 142.5 512 33.6
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 1.8e-31 141.4 436 34.4
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 1.8e-31 141.4 425 33.9
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 2.3e-31 141.0 288 39.6
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 5.2e-31 139.8 385 34.3
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 6.8e-31 139.4 447 33.3
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.2e-30 138.7 421 33.3
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 1.5e-30 138.3 362 34.8
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 2.0e-30 137.9 421 35.6
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 3.4e-30 137.1 395 35.4
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 4.4e-30 136.7 183 44.3
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 4.4e-30 136.7 390 33.1
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 7.6e-30 136.0 401 31.7
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 7.6e-30 136.0 390 32.6
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 7.6e-30 136.0 426 31.9
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 1.7e-29 134.8 451 33.9
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 3.8e-29 133.7 363 33.6
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 6.4e-29 132.9 453 31.8
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 6.4e-29 132.9 406 34.7
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 8.4e-29 132.5 411 34.8
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 1.1e-28 132.1 440 31.8
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 1.1e-28 132.1 349 33.8
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 7.1e-28 129.4 377 35.3
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 9.2e-28 129.0 460 32.0
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 1.6e-27 128.3 213 40.8
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 1.6e-27 128.3 422 36.0
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 2.7e-27 127.5 240 38.3
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 4.6e-27 126.7 365 33.2
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 7.8e-27 125.9 394 33.5
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 1.3e-26 125.2 428 32.5
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 1.7e-26 124.8 378 33.1
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 8.6e-26 122.5 303 38.0
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 8.6e-26 122.5 433 32.3
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 1.5e-25 121.7 324 34.0
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.9e-25 121.3 409 33.0
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 2.5e-25 120.9 407 33.7
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 2.5e-25 120.9 425 33.2
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 3.3e-25 120.6 253 37.9
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 4.3e-25 120.2 389 33.7
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 9.6e-25 119.0 413 33.2
C02p09870 Brassica napus HOM05D006718 ORTHO05D008492 6.2e-24 116.3 260 43.8
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 6.2e-24 116.3 415 32.3
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 6.2e-24 116.3 442 32.4
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 8.1e-24 115.9 375 34.1
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 8.1e-24 115.9 417 31.4
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 1.1e-23 115.5 413 32.9
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 6.9e-23 112.8 153 49.7
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 6.9e-23 112.8 310 34.2
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.6e-22 110.9 343 33.2
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 4.4e-22 110.2 504 30.2
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 5.8e-22 109.8 336 32.4
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 1.7e-21 108.2 151 45.0
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 4.9e-21 106.7 406 32.0
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 8.4e-21 105.9 442 31.7
BolC2t06894H Brassica oleracea HOM05D006718 ORTHO05D008492 2.4e-20 104.4 196 45.9
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 1.6e-19 101.7 191 35.6
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 6.2e-16 89.7 372 29.6
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.4e-15 88.6 462 29.0
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 3.8e-13 80.5 439 29.6
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 2.5e-09 67.8 415 27.0
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 9.6e-09 65.9 78 41.0
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 1.1e-07 62.4 268 25.0


User provided reference genes

Program Settings