Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 3.1e-100 368.6 210 100.0
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 8.9e-95 350.5 217 95.4
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 1.1e-36 157.5 209 58.9
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 7.9e-35 151.4 95 83.2
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 1.7e-29 133.7 210 54.3
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 8.4e-29 131.3 213 52.6
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 8.4e-29 131.3 213 52.6
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 1.1e-28 131.0 212 53.3
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 3.5e-27 125.9 213 52.6
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 1.3e-26 124.0 214 51.9
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 6.7e-26 121.7 207 52.7
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 1.1e-25 120.9 214 50.5
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 1.9e-25 120.2 212 50.0
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 2.8e-24 116.3 207 50.7
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 3.1e-23 112.8 210 48.6
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 1.6e-19 100.5 209 37.3
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 3.6e-19 99.4 213 45.5
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 7.9e-19 98.2 118 51.7
BcaB08g36664 Brassica carinata HOM05D006881 ORTHO05D008423 2.2e-16 90.1 210 44.3
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 1.8e-15 87.0 76 60.5
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 7.7e-14 81.6 143 44.8
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 1.0e-13 81.3 148 51.4
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 2.2e-13 80.1 143 44.1
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 3.8e-13 79.3 50 72.0
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 5.0e-13 79.0 144 52.1
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 6.5e-13 78.6 113 44.2
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 8.5e-13 78.2 143 49.0
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 1.4e-12 77.4 50 70.0
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 1.4e-12 77.4 50 72.0
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 1.4e-12 77.4 143 47.6
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 2.5e-12 76.6 143 39.2
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 3.2e-12 76.3 145 37.2
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 3.2e-12 76.3 143 47.6
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 3.2e-12 76.3 42 85.7
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 3.2e-12 76.3 42 81.0
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 3.2e-12 76.3 50 72.0
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 4.2e-12 75.9 103 47.6
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 5.5e-12 75.5 42 81.0
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 5.5e-12 75.5 143 45.5
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 5.5e-12 75.5 42 78.6
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 5.5e-12 75.5 42 78.6
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 7.2e-12 75.1 51 70.6
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 7.2e-12 75.1 50 68.0
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 7.2e-12 75.1 50 68.0
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 7.2e-12 75.1 50 70.0
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 9.4e-12 74.7 42 78.6
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 1.2e-11 74.3 111 45.0
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 1.2e-11 74.3 50 66.0
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 1.2e-11 74.3 103 45.6
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 1.6e-11 73.9 50 68.0
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 1.6e-11 73.9 42 81.0
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 2.1e-11 73.6 51 66.7
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 2.1e-11 73.6 41 82.9
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 2.1e-11 73.6 42 81.0
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 2.7e-11 73.2 50 66.0
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 2.7e-11 73.2 50 66.0
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 2.7e-11 73.2 42 78.6
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 2.7e-11 73.2 50 68.0
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 2.7e-11 73.2 42 81.0
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 4.7e-11 72.4 103 45.6
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 4.7e-11 72.4 42 78.6
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 4.7e-11 72.4 40 80.0
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 4.7e-11 72.4 42 78.6
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 6.1e-11 72.0 42 78.6
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 6.1e-11 72.0 42 78.6
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 7.9e-11 71.6 42 78.6
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 7.9e-11 71.6 50 66.0
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 7.9e-11 71.6 50 66.0
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.0e-10 71.2 50 66.0
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.0e-10 71.2 50 66.0
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 1.0e-10 71.2 42 76.2
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 1.0e-10 71.2 50 66.0
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 1.4e-10 70.9 39 84.6
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 1.4e-10 70.9 42 76.2
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 1.4e-10 70.9 50 68.0
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 1.4e-10 70.9 39 84.6
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 1.8e-10 70.5 145 34.5
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 1.8e-10 70.5 50 66.0
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 1.8e-10 70.5 42 78.6
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 2.3e-10 70.1 52 69.2
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 2.3e-10 70.1 99 47.5
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 3.0e-10 69.7 50 64.0
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 3.0e-10 69.7 109 42.2
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 3.9e-10 69.3 39 82.1
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.9e-10 69.3 39 82.1
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.9e-10 69.3 39 82.1
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.9e-10 69.3 39 82.1
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.9e-10 69.3 39 82.1
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 3.9e-10 69.3 50 64.0
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 5.1e-10 68.9 48 66.7
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 5.1e-10 68.9 42 73.8
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 5.1e-10 68.9 50 60.0
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 6.7e-10 68.6 42 73.8
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 8.8e-10 68.2 42 69.0
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 8.8e-10 68.2 42 73.8
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 8.8e-10 68.2 39 79.5
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 1.1e-09 67.8 40 85.0
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 1.1e-09 67.8 50 60.0
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 1.5e-09 67.4 42 71.4
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 2.6e-09 66.6 50 62.0
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 2.6e-09 66.6 50 62.0
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 3.3e-09 66.2 40 82.5
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 7.4e-09 65.1 44 65.9
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 9.7e-09 64.7 101 45.5
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 1.7e-08 63.9 41 68.3
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 1.7e-08 63.9 39 71.8
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 1.7e-08 63.9 50 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 2.2e-08 63.5 35 80.0
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 2.2e-08 63.5 49 63.3
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 2.2e-08 63.5 39 74.4
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 2.8e-08 63.2 104 39.4
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 1.1e-07 61.2 39 69.2
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 4.1e-07 59.3 39 66.7
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 5.3e-07 58.9 43 62.8
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 2.6e-06 56.6 38 68.4


User provided reference genes

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