Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 2.7e-82 308.9 191 100.0
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 2.7e-82 308.9 191 100.0
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 6.4e-76 287.7 153 99.3
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 2.4e-59 232.6 192 72.9
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 1.6e-47 193.4 225 58.7
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 5.9e-45 184.9 213 56.8
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.9e-43 179.9 179 62.6
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 9.3e-43 177.6 213 56.8
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.2e-42 177.2 212 56.1
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 3.9e-41 172.2 162 69.1
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 5.7e-40 168.3 223 53.8
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.6e-39 166.8 215 54.9
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.6e-39 166.8 215 54.9
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 1.8e-38 163.3 185 60.5
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 3.0e-33 146.0 226 50.9
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.5e-32 143.7 221 51.6
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 4.4e-32 142.1 229 48.5
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 4.1e-30 135.6 183 55.2
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.0e-28 131.0 185 55.7
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 2.4e-22 109.8 224 46.4
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.7e-20 103.6 180 45.6
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 2.9e-20 102.8 103 64.1
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 2.9e-20 102.8 103 64.1
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.8e-20 102.4 167 46.7
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 1.1e-19 100.9 102 63.7
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 1.1e-19 100.9 102 63.7
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 4.2e-19 99.0 180 45.0
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.2e-18 97.4 168 48.2
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 2.7e-18 96.3 179 45.3
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 3.6e-18 95.9 173 46.2
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 1.0e-17 94.4 182 45.6
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.4e-17 94.0 184 45.1
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.0e-17 92.4 171 43.9
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 6.7e-17 91.7 168 42.3
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 5.7e-16 88.6 178 39.3
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 5.7e-16 88.6 176 42.6
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 1.7e-15 87.0 181 41.4
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 2.2e-15 86.7 183 42.6
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.8e-15 86.3 170 44.7
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 2.8e-15 86.3 170 44.7
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.7e-15 85.9 182 41.8
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 1.1e-14 84.3 154 44.2
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 1.1e-14 84.3 182 41.8
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 1.1e-14 84.3 176 40.9
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.4e-14 84.0 183 42.1
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 1.4e-14 84.0 184 40.8
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.4e-14 84.0 171 40.9
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.8e-14 83.6 182 40.1
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 1.8e-14 83.6 182 37.4
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 2.4e-14 83.2 174 39.1
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.1e-14 82.8 180 42.2
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 3.1e-14 82.8 182 40.1
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 4.1e-14 82.4 180 38.3
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 4.1e-14 82.4 172 41.3
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 5.3e-14 82.0 177 40.1
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 9.1e-14 81.3 177 42.4
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 9.1e-14 81.3 177 42.4
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 9.1e-14 81.3 182 40.1
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.6e-13 80.5 177 42.4
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.5e-13 79.3 178 43.8
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 3.5e-13 79.3 183 42.6
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 7.7e-13 78.2 175 39.4
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 7.7e-13 78.2 174 39.7
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 1.0e-12 77.8 170 34.7
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 1.0e-12 77.8 186 37.6
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 1.3e-12 77.4 171 39.2
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.3e-12 77.4 171 37.4
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.7e-12 77.0 172 39.5
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 2.2e-12 76.6 165 38.8
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 2.9e-12 76.3 173 40.5
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 5.0e-12 75.5 186 38.2
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 5.0e-12 75.5 184 38.6
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 6.5e-12 75.1 176 39.2
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 8.5e-12 74.7 180 40.0
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 8.5e-12 74.7 180 40.0
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 1.9e-11 73.6 172 37.8
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 1.9e-11 73.6 174 39.7
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 2.5e-11 73.2 166 33.1
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 2.5e-11 73.2 169 39.6
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 3.2e-11 72.8 176 41.5
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 4.2e-11 72.4 158 40.5
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 4.2e-11 72.4 180 37.8
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 4.2e-11 72.4 173 35.8
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 5.5e-11 72.0 158 39.9
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 5.5e-11 72.0 158 39.9
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.2e-10 70.9 179 38.0
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 1.6e-10 70.5 163 37.4
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 1.6e-10 70.5 181 37.0
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 2.1e-10 70.1 177 37.9
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 2.1e-10 70.1 173 38.2
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.7e-10 69.7 192 36.5
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 2.7e-10 69.7 191 35.6
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 4.7e-10 68.9 190 35.3
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 6.1e-10 68.6 150 38.7
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 1.0e-09 67.8 183 35.5
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.8e-09 67.0 173 35.3
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 2.3e-09 66.6 167 37.1
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 3.0e-09 66.2 172 37.8
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 3.0e-09 66.2 192 34.4
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 5.2e-09 65.5 172 33.7
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 5.2e-09 65.5 159 40.9
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 6.8e-09 65.1 170 35.3
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.2e-08 64.3 166 37.3
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.5e-08 63.9 173 35.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 2.6e-08 63.2 175 35.4
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.6e-08 63.2 148 37.2
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.6e-08 63.2 148 37.2
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.4e-08 62.8 174 36.8
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 3.4e-08 62.8 177 36.2
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 7.5e-08 61.6 170 34.7
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 1.3e-07 60.8 192 35.9
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.7e-07 60.5 165 36.4
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 2.2e-07 60.1 208 31.7
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 3.7e-07 59.3 160 36.9
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 4.8e-07 58.9 180 33.9
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 8.3e-07 58.2 163 39.3
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 8.3e-07 58.2 187 37.4
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 1.4e-06 57.4 161 37.9


User provided reference genes

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