Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.3e-200 703.0 384 100.0
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 4.0e-125 452.2 286 92.7
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 5.3e-122 441.8 286 91.3
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.8e-114 416.8 235 87.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 5.9e-113 411.8 234 87.6
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 3.8e-112 409.1 286 87.1
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 3.2e-111 406.0 286 86.4
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 9.5e-111 404.4 286 86.4
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.1e-110 403.3 234 86.3
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 4.7e-110 402.1 286 86.0
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 3.3e-103 379.4 234 81.2
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 3.0e-101 372.9 290 77.2
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.4e-98 364.0 234 79.1
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 2.0e-97 360.1 234 78.6
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 3.6e-94 349.4 238 76.5
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 6.6e-88 328.6 290 72.8
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 3.4e-84 316.2 291 70.1
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 4.4e-84 315.8 291 70.1
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 9.8e-84 314.7 290 69.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.2e-83 313.5 291 67.7
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 2.2e-83 313.5 290 69.0
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.7e-83 312.8 291 67.4
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 4.9e-83 312.4 291 69.4
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 8.3e-83 311.6 288 71.2
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.4e-82 310.8 290 69.7
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.9e-82 310.5 241 65.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.9e-82 310.5 285 67.7
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.1e-82 309.3 291 67.4
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 4.1e-82 309.3 292 66.1
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 7.1e-82 308.5 291 66.0
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 9.2e-82 308.1 291 66.3
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.2e-81 307.8 241 66.4
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 1.6e-81 307.4 288 70.8
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 2.7e-81 306.6 290 64.8
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.5e-81 306.2 288 69.8
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.6e-81 305.8 308 64.9
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.3e-80 304.3 290 65.9
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 2.3e-80 303.5 240 65.4
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.0e-80 303.1 290 64.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.1e-80 302.4 292 67.8
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.1e-80 302.4 292 67.8
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 5.1e-80 302.4 292 64.7
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.1e-79 301.2 292 66.8
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.1e-79 301.2 290 67.9
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.1e-79 301.2 290 67.9
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.5e-79 300.8 294 68.4
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.5e-79 300.8 290 67.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-79 300.8 290 64.1
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 3.3e-79 299.7 290 67.6
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 4.3e-79 299.3 292 67.5
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.3e-79 299.3 292 67.5
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 7.3e-79 298.5 291 65.6
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 7.3e-79 298.5 292 64.7
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.2e-78 297.7 290 67.9
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.2e-78 297.7 291 64.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.2e-78 297.7 292 67.1
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.2e-78 297.7 292 67.1
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.6e-78 297.4 299 64.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.8e-78 296.6 296 67.9
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.8e-78 296.6 296 67.9
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 2.8e-78 296.6 291 66.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 2.8e-78 296.6 291 65.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 4.7e-78 295.8 291 67.7
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 4.7e-78 295.8 291 69.4
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 8.1e-78 295.0 239 64.9
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 8.1e-78 295.0 239 64.9
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 8.1e-78 295.0 291 64.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 8.1e-78 295.0 292 66.4
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.4e-77 294.3 291 68.7
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.8e-77 293.9 292 66.1
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.0e-77 292.7 289 67.5
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 4.0e-77 292.7 297 65.3
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.2e-76 291.2 292 66.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.0e-76 290.4 324 62.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.0e-76 290.4 292 55.1
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 2.0e-76 290.4 290 66.9
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.6e-76 290.0 291 67.0
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.6e-76 290.0 291 67.0
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.4e-76 289.7 238 64.7
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 4.4e-76 289.3 286 65.7
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.3e-75 287.7 292 65.8
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-75 287.7 291 61.5
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.9e-75 286.6 324 60.8
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 2.9e-75 286.6 290 66.9
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.8e-75 286.2 292 65.4
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 4.9e-75 285.8 324 61.4
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 6.4e-75 285.4 292 66.1
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.1e-74 284.6 238 63.0
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.1e-74 284.6 334 59.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.4e-74 283.5 291 67.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 9.2e-74 281.6 290 65.2
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 9.2e-74 281.6 328 60.7
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.2e-73 281.2 290 64.5
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.1e-73 280.4 290 65.9
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.0e-72 278.1 292 63.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 6.6e-72 275.4 291 62.9
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.5e-68 264.2 289 63.0
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.4e-66 256.9 295 50.8
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 7.1e-66 255.4 218 61.9
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.1e-63 248.1 286 59.4
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.5e-63 247.7 325 56.3
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.5e-63 246.9 291 59.5
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.6e-63 245.7 325 56.6
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-62 244.6 291 59.1
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.8e-62 243.4 288 58.0
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.0e-61 239.6 291 59.8
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.5e-60 237.7 290 57.2
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.0e-60 237.3 295 48.1
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.6e-60 236.9 325 55.1
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 6.4e-59 232.3 292 56.8
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 9.3e-58 228.4 227 54.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 6.7e-56 222.2 239 49.8
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.5e-55 220.3 241 50.2
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 2.2e-51 207.2 230 45.2
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.9e-48 196.4 284 43.0
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.4e-45 187.2 252 44.0
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.6e-44 183.7 242 47.5
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.2e-43 180.6 286 52.4
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 2.1e-41 174.1 314 43.9
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.9e-33 145.6 230 33.5
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.1e-29 133.7 137 56.2
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.0e-27 128.6 235 33.2
BolC7t44024H Brassica oleracea HOM05D023488 ORTHO05D022087 7.4e-23 112.5 73 75.3
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 8.2e-22 109.0 232 28.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.1e-21 108.6 144 50.7
C02p46390 Brassica napus HOM05D023488 ORTHO05D022087 1.5e-20 104.8 68 76.5
BolC8t48665H Brassica oleracea HOM05D023488 ORTHO05D022087 2.9e-19 100.5 72 69.4
BolC2t08635H Brassica oleracea HOM05D000025 ORTHO05D000040 1.1e-18 98.6 56 82.1
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.6e-17 94.7 77 50.6
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.6e-15 87.4 84 54.8
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 9.7e-15 85.5 132 43.9
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.8e-13 81.3 94 51.1
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.1e-13 80.5 286 26.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.9e-11 73.9 257 26.8
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.8e-11 73.6 49 71.4
BolC8t52527H Brassica oleracea HOM05D023488 ORTHO05D022087 5.5e-10 69.7 44 75.0
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 9.4e-10 68.9 51 66.7
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 2.6e-07 60.8 78 85.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.3e-07 60.5 45 60.0
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 9.7e-07 58.9 79 40.5
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 2.8e-06 57.4 53 58.5
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.7e-06 57.0 44 59.1


User provided reference genes

Program Settings