Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56740 Brassica napus HOM05D000088 ORTHO05D002723 1.5e-77 292.7 144 100.0
BolC9t58530H Brassica oleracea HOM05D000088 ORTHO05D002723 1.5e-77 292.7 144 100.0
BcaC04g24216 Brassica carinata HOM05D000088 ORTHO05D002723 5.7e-77 290.8 143 99.3
BolC9t57605H Brassica oleracea HOM05D000088 ORTHO05D002723 1.1e-72 276.6 144 93.8
C07p35930 Brassica napus HOM05D000088 ORTHO05D002723 4.2e-72 274.6 144 93.8
BolC7t44110H Brassica oleracea HOM05D000088 ORTHO05D002723 4.2e-72 274.6 144 93.8
C02p29060 Brassica napus HOM05D000088 ORTHO05D002723 2.1e-71 272.3 144 93.1
BcaC03g15297 Brassica carinata HOM05D009754 ORTHO05D002723 8.0e-71 270.4 143 92.3
BcaNung01370 Brassica carinata HOM05D000088 ORTHO05D002723 1.5e-64 249.6 200 66.5
BcaC05g25296 Brassica carinata HOM05D000088 ORTHO05D002723 3.8e-57 224.9 199 62.3
C05p11760 Brassica napus HOM05D000088 ORTHO05D002723 3.8e-57 224.9 199 62.3
BraA06t24186Z Brassica rapa HOM05D000088 ORTHO05D002723 8.6e-57 223.8 199 61.8
BolC5t29922H Brassica oleracea HOM05D000088 ORTHO05D002723 1.9e-56 222.6 199 61.8
A06p10000 Brassica napus HOM05D000088 ORTHO05D002723 9.5e-56 220.3 199 61.3
Thhalv10007646m.g Eutrema salsugineum HOM05D000088 ORTHO05D002723 1.5e-53 213.0 207 58.0
CARHR014370 Cardamine hirsuta HOM05D000088 ORTHO05D002723 3.7e-52 208.4 203 57.6
AT1G14000 Arabidopsis thaliana HOM05D000088 ORTHO05D002723 6.4e-52 207.6 203 57.1
Carub.0001s1369 Capsella rubella HOM05D000088 ORTHO05D002723 6.4e-52 207.6 204 57.4
AL1G25840 Arabidopsis lyrata HOM05D000088 ORTHO05D002723 1.4e-51 206.5 203 56.7
BcaB08g34354 Brassica carinata HOM05D000088 ORTHO05D002723 1.4e-51 206.5 207 58.0
Sp1g12360 Schrenkiella parvula HOM05D000088 ORTHO05D002723 4.1e-51 204.9 207 56.0
THA.LOC104801810 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 3.5e-50 201.8 204 56.9
A09p62570 Brassica napus HOM05D000088 ORTHO05D002723 6.0e-50 201.1 203 57.6
BcaB08g34352 Brassica carinata HOM05D000088 ORTHO05D002723 1.3e-49 199.9 201 56.7
BcaB08g34353 Brassica carinata HOM05D000088 ORTHO05D002723 1.3e-49 199.9 201 56.7
C08p46130 Brassica napus HOM05D000088 ORTHO05D002723 1.3e-49 199.9 201 56.7
BolC8t52163H Brassica oleracea HOM05D000088 ORTHO05D002723 1.3e-49 199.9 201 56.7
THA.LOC104805177 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 2.8e-47 192.2 206 55.3
Aa31LG1G1030 Aethionema arabicum HOM05D000088 ORTHO05D002723 2.3e-46 189.1 201 54.7
BraA09t41620Z Brassica rapa HOM05D000088 ORTHO05D002723 5.2e-46 188.0 232 50.0
Dinv34091 Davidia involucrata HOM05D000088 ORTHO05D002723 1.3e-44 183.3 198 54.0
Cfa008933 Carpinus fangiana HOM05D000088 ORTHO05D002723 2.9e-44 182.2 199 51.3
Ciclev10031585m.g Citrus clementina HOM05D000088 ORTHO05D002723 6.4e-44 181.0 200 52.5
Atru.chr11.1723 Acer truncatum HOM05D000088 ORTHO05D002723 1.9e-43 179.5 202 51.5
TWI75G0144 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 5.4e-43 177.9 199 50.8
GSVIVG01003214001 Vitis vinifera HOM05D000088 ORTHO05D002723 5.4e-43 177.9 196 51.0
Manes.01G033000 Manihot esculenta HOM05D000088 ORTHO05D002723 7.0e-43 177.6 199 51.3
Lj6A784T66 Lonicera japonica HOM05D000088 ORTHO05D002723 9.2e-43 177.2 196 52.6
Sed0006999 Sechium edule HOM05D000088 ORTHO05D002723 1.2e-42 176.8 188 52.1
Hund25210 Selenicereus undatus HOM05D000088 ORTHO05D002723 1.2e-42 176.8 200 51.5
CiPaw.06G088300 Carya illinoinensis HOM05D000088 ORTHO05D002723 2.1e-42 176.0 198 51.5
Manes.05G105800 Manihot esculenta HOM05D000088 ORTHO05D002723 3.5e-42 175.3 177 53.7
Cpa.g.sc1.62 Carica papaya HOM05D000088 ORTHO05D002723 4.6e-42 174.9 201 52.2
Rhsim12G0132900 Rhododendron simsii HOM05D000088 ORTHO05D002723 6.0e-42 174.5 199 50.8
Duzib268G1625 Durio zibethinus HOM05D000088 ORTHO05D002723 1.0e-41 173.7 202 51.0
Sed0015795 Sechium edule HOM05D000088 ORTHO05D002723 1.0e-41 173.7 199 50.8
TAR374G0898 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.0e-41 173.7 200 51.5
Lalb_Chr05g0220221 Lupinus albus HOM05D000088 ORTHO05D002723 1.3e-41 173.3 186 51.1
Sc04g0007890 Simmondsia chinensis HOM05D000088 ORTHO05D002723 1.3e-41 173.3 182 52.7
TAR622G0409 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.7e-41 172.9 206 49.0
COL.COLO4_27980 Corchorus olitorius HOM05D000088 ORTHO05D002723 2.3e-41 172.6 203 50.2
Hund05865 Selenicereus undatus HOM05D000088 ORTHO05D002723 2.3e-41 172.6 145 62.1
Duzib251G0440 Durio zibethinus HOM05D000088 ORTHO05D002723 3.0e-41 172.2 202 50.5
Lalb_Chr09g0329171 Lupinus albus HOM05D000088 ORTHO05D002723 3.0e-41 172.2 186 50.5
Sabra08G0068200 Salix brachista HOM05D000088 ORTHO05D002723 3.0e-41 172.2 203 49.8
Gohir.D02G127300 Gossypium hirsutum HOM05D000088 ORTHO05D002723 3.9e-41 171.8 194 50.0
Gorai.005G142900 Gossypium raimondii HOM05D000088 ORTHO05D002723 3.9e-41 171.8 194 50.0
Thecc.02G340000 Theobroma cacao HOM05D000088 ORTHO05D002723 3.9e-41 171.8 196 51.5
Potri.010G164500 Populus trichocarpa HOM05D000088 ORTHO05D002723 5.0e-41 171.4 204 51.0
PGR102G1758 Punica granatum HOM05D000088 ORTHO05D002723 5.0e-41 171.4 177 53.7
Gohir.A03G102400 Gossypium hirsutum HOM05D000088 ORTHO05D002723 6.6e-41 171.0 194 50.0
Lsat_1_v5_gn_8_48780 Lactuca sativa HOM05D000088 ORTHO05D002723 6.6e-41 171.0 199 48.2
Nn4g23266 Nelumbo nucifera HOM05D000088 ORTHO05D002723 6.6e-41 171.0 210 48.6
EL10Ac6g13259 Beta vulgaris HOM05D000088 ORTHO05D002723 8.6e-41 170.6 205 48.8
Haze_11962 Corylus avellana HOM05D000088 ORTHO05D002723 8.6e-41 170.6 212 47.2
Gohir.A12G163500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.9e-40 169.5 202 49.5
Prupe.1G279200 Prunus persica HOM05D000088 ORTHO05D002723 2.5e-40 169.1 199 50.3
Gohir.D12G166500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 4.3e-40 168.3 202 49.0
Gorai.008G179300 Gossypium raimondii HOM05D000088 ORTHO05D002723 4.3e-40 168.3 202 49.0
Lj3A1033G51 Lonicera japonica HOM05D000088 ORTHO05D002723 4.3e-40 168.3 166 53.6
DCAR_007175 Daucus carota HOM05D000088 ORTHO05D002723 7.3e-40 167.5 195 48.2
SalBow8G2740 Salvia bowleyana HOM05D000088 ORTHO05D002723 7.3e-40 167.5 199 50.3
CsaV3_5G033030 Cucumis sativus L. HOM05D000088 ORTHO05D002723 1.2e-39 166.8 171 53.8
Lalb_Chr16g0385661 Lupinus albus HOM05D000088 ORTHO05D002723 1.2e-39 166.8 186 49.5
Glyma.07G228000 Glycine max HOM05D000088 ORTHO05D002723 1.6e-39 166.4 185 49.2
Potri.008G090800 Populus trichocarpa HOM05D000088 ORTHO05D002723 1.6e-39 166.4 197 50.3
Duzib248G1678 Durio zibethinus HOM05D000088 ORTHO05D002723 2.1e-39 166.0 191 48.7
Hma1.2p1_0354F.1_g133840 Hydrangea macrophylla HOM05D000088 ORTHO05D002723 2.1e-39 166.0 173 52.6
C06p48190 Brassica napus HOM05D000088 ORTHO05D002723 2.8e-39 165.6 134 67.9
ClCG05G024010 Citrullus lanatus HOM05D000088 ORTHO05D002723 2.8e-39 165.6 171 52.6
MSTRG.13430 Avicennia marina HOM05D000088 ORTHO05D002723 3.6e-39 165.2 198 48.0
MELO3C012125.2 Cucumis melo HOM05D000088 ORTHO05D002723 3.6e-39 165.2 171 53.2
RcHm_v2.0_Chr4g0439171 Rosa chinensis HOM05D000088 ORTHO05D002723 3.6e-39 165.2 199 48.2
HPP92_016904 Vanilla planifolia HOM05D000088 ORTHO05D002723 3.6e-39 165.2 201 47.3
MSTRG.2333 Avicennia marina HOM05D000088 ORTHO05D002723 6.2e-39 164.5 198 48.5
SGA_v2.0_scaffold389G50546 Striga asiatica HOM05D000088 ORTHO05D002723 6.2e-39 164.5 197 49.2
Ah.03g134730 Amaranthus hybridus HOM05D000088 ORTHO05D002723 8.1e-39 164.1 184 51.1
TAR371G1093 Trochodendron aralioides HOM05D000088 ORTHO05D002723 8.1e-39 164.1 171 53.2
Dinv16687 Davidia involucrata HOM05D000088 ORTHO05D002723 1.1e-38 163.7 198 49.5
FAN07G1717 Fragaria x ananassa HOM05D000088 ORTHO05D002723 1.1e-38 163.7 198 48.5
Cc11_g12640 Coffea canephora HOM05D000088 ORTHO05D002723 1.4e-38 163.3 198 47.0
Solyc05g013070.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 1.4e-38 163.3 198 49.0
MD16G1067500 Malus domestica HOM05D000088 ORTHO05D002723 1.8e-38 162.9 199 48.7
Actinidia12303 Actinidia chinensis HOM05D000088 ORTHO05D002723 2.3e-38 162.5 198 48.0
Aqoxy3G03481 Aquilegia oxysepala HOM05D000088 ORTHO05D002723 3.1e-38 162.2 176 50.6
arahy.Tifrunner.gnm1.ann1.47C61G Arachis hypogaea HOM05D000088 ORTHO05D002723 3.1e-38 162.2 172 51.2
arahy.Tifrunner.gnm1.ann1.EJ8ZFW Arachis hypogaea HOM05D000088 ORTHO05D002723 3.1e-38 162.2 172 51.2
Sabra10G0124900 Salix brachista HOM05D000088 ORTHO05D002723 3.1e-38 162.2 212 46.2
PGSC0003DMG400028346 Solanum tuberosum HOM05D000088 ORTHO05D002723 3.1e-38 162.2 198 47.5
CiPaw.05G130000 Carya illinoinensis HOM05D000088 ORTHO05D002723 4.0e-38 161.8 193 47.7
Lj4g0024034 Lotus japonicus HOM05D000088 ORTHO05D002723 4.0e-38 161.8 177 49.7
Peaxi162Scf00222g00246 Petunia axillaris HOM05D000088 ORTHO05D002723 4.0e-38 161.8 163 54.0
Sopen05g007840 Solanum pennellii HOM05D000088 ORTHO05D002723 4.0e-38 161.8 198 48.5
TWI79G1035 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 4.0e-38 161.8 199 48.2
ATR0564G423 Amborella trichopoda HOM05D000088 ORTHO05D002723 6.8e-38 161.0 170 52.9
ECA233G4788 Erigeron canadensis HOM05D000088 ORTHO05D002723 6.8e-38 161.0 198 47.0
FvH4_4g30780 Fragaria vesca HOM05D000088 ORTHO05D002723 6.8e-38 161.0 198 49.0
FAN12G3418 Fragaria x ananassa HOM05D000088 ORTHO05D002723 6.8e-38 161.0 198 49.0
Medtr4g082325 Medicago truncatula HOM05D000088 ORTHO05D002723 6.8e-38 161.0 176 50.0
Migut.E00071 Erythranthe guttata HOM05D000088 ORTHO05D002723 8.9e-38 160.6 198 48.0
Psat7g156080 Pisum sativum HOM05D000088 ORTHO05D002723 1.2e-37 160.2 177 49.2
Migut.L01250 Erythranthe guttata HOM05D000088 ORTHO05D002723 1.5e-37 159.8 171 50.9
Gorai.013G089100 Gossypium raimondii HOM05D000088 ORTHO05D002723 1.5e-37 159.8 196 47.4
Ca_23883_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002723 2.0e-37 159.5 176 49.4
FAN22G1820 Fragaria x ananassa HOM05D000088 ORTHO05D002723 2.0e-37 159.5 199 47.2
Gohir.A13G085100 Gossypium hirsutum HOM05D000088 ORTHO05D002723 2.6e-37 159.1 196 47.4
Phvul.002G169100 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 2.6e-37 159.1 170 51.2
CSS0019856 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 3.4e-37 158.7 195 47.7
DCAR_030993 Daucus carota HOM05D000088 ORTHO05D002723 3.4e-37 158.7 199 47.2
Sopen01g006790 Solanum pennellii HOM05D000088 ORTHO05D002723 3.4e-37 158.7 173 50.9
Solyc01g010950.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 4.4e-37 158.3 173 50.9
arahy.Tifrunner.gnm1.ann1.0QRZ59 Arachis hypogaea HOM05D000088 ORTHO05D002723 5.8e-37 157.9 188 47.3
ECA246G4818 Erigeron canadensis HOM05D000088 ORTHO05D002723 7.5e-37 157.5 190 47.9
Gohir.D13G077900 Gossypium hirsutum HOM05D000088 ORTHO05D002723 7.5e-37 157.5 196 46.9
TPR.G34086 Trifolium pratense HOM05D000088 ORTHO05D002723 7.5e-37 157.5 176 49.4
HanXRQChr08g0210651 Helianthus annuus HOM05D000088 ORTHO05D002723 9.9e-37 157.1 196 46.4
Oeu021075.6 Olea europaea HOM05D000088 ORTHO05D002723 9.9e-37 157.1 231 42.0
Nitab4.5_0004906g0030 Nicotiana tabacum HOM05D000088 ORTHO05D002723 1.3e-36 156.8 173 50.3
Glyma.20G031300 Glycine max HOM05D000088 ORTHO05D002723 1.7e-36 156.4 170 50.0
CSS0044737 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 2.2e-36 156.0 193 46.6
CSS0046870 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 2.2e-36 156.0 193 46.6
PSO478G1272 Papaver somniferum HOM05D000088 ORTHO05D002723 2.2e-36 156.0 176 48.9
Glyma.01G052600 Glycine max HOM05D000088 ORTHO05D002723 2.9e-36 155.6 189 47.6
SGA_v2.0_scaffold455G51908 Striga asiatica HOM05D000088 ORTHO05D002723 2.9e-36 155.6 198 44.9
VMungo0251G2979 Vigna mungo HOM05D000088 ORTHO05D002723 3.7e-36 155.2 170 50.0
CDE07G0214 Ceratophyllum demersum HOM05D000088 ORTHO05D002723 4.9e-36 154.8 187 46.5
DCAR_027439 Daucus carota HOM05D000088 ORTHO05D002723 4.9e-36 154.8 195 45.6
vmacro01348 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 4.9e-36 154.8 173 50.3
HanXRQChr17g0545371 Helianthus annuus HOM05D000088 ORTHO05D002723 6.4e-36 154.5 193 46.1
Nitab4.5_0000391g0280 Nicotiana tabacum HOM05D000088 ORTHO05D002723 8.3e-36 154.1 173 49.7
Lsat_1_v5_gn_3_51840 Lactuca sativa HOM05D000088 ORTHO05D002723 1.1e-35 153.7 193 46.1
VMungo1215G0771 Vigna mungo HOM05D000088 ORTHO05D002723 2.4e-35 152.5 176 48.9
Phvul.002G091900 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 4.1e-35 151.8 174 49.4
AUR62005837 Chenopodium quinoa HOM05D000088 ORTHO05D002723 7.1e-35 151.0 163 51.5
AUR62032831 Chenopodium quinoa HOM05D000088 ORTHO05D002723 7.1e-35 151.0 163 51.5
PSO063G1877 Papaver somniferum HOM05D000088 ORTHO05D002723 9.2e-35 150.6 185 45.9
MBI02_g14226_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002723 1.0e-33 147.1 246 40.7
vmacro16350 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 1.0e-33 147.1 272 36.4
Rhsim12G0079000 Rhododendron simsii HOM05D000088 ORTHO05D002723 1.3e-33 146.7 200 44.0
PSO063G1164 Papaver somniferum HOM05D000088 ORTHO05D002723 1.7e-33 146.4 185 45.4
PSO198G0068 Papaver somniferum HOM05D000088 ORTHO05D002723 1.7e-33 146.4 185 45.4
Oeu016240.4 Olea europaea HOM05D000088 ORTHO05D002723 3.0e-33 145.6 219 41.1
BcaC04g20116 Brassica carinata HOM05D000088 ORTHO05D002723 6.6e-33 144.4 73 90.4
Lj2g0027547 Lotus japonicus HOM05D000088 ORTHO05D002723 1.5e-32 143.3 173 46.8
Zm00001eb328410 Zea mays HOM05D000088 ORTHO05D002723 3.1e-30 135.6 173 45.1
Os07g0632800 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002723 1.3e-28 130.2 157 46.5
Eucgr.B03199 Eucalyptus grandis HOM05D000088 ORTHO05D002723 3.8e-28 128.6 74 77.0
MD13G1068700 Malus domestica HOM05D000088 ORTHO05D002723 6.4e-28 127.9 165 43.6
CAN.G964.31 Capsicum annuum HOM05D000088 ORTHO05D002723 2.4e-27 125.9 73 76.7
arahy.Tifrunner.gnm1.ann1.SA054G Arachis hypogaea HOM05D000088 ORTHO05D002723 4.6e-26 121.7 72 70.8
Actinidia33222 Actinidia chinensis HOM05D000088 ORTHO05D002723 1.2e-23 113.6 167 42.5
DCAR_027440 Daucus carota HOM05D000088 ORTHO05D002723 4.9e-20 101.7 163 39.3
Nn3g17321 Nelumbo nucifera HOM05D000088 ORTHO05D002723 8.4e-20 100.9 161 45.3
SMO348G0065 Selaginella moellendorffii HOM05D000088 ORTHO05D002723 3.3e-16 89.0 169 33.1
Mapoly0031s0049 Marchantia polymorpha HOM05D000088 ORTHO05D002723 1.6e-15 86.7 165 35.2
AagrBONN_evm.TU.Sc2ySwM_344.1476 Anthoceros agrestis HOM05D000088 ORTHO05D002723 4.8e-15 85.1 58 65.5
Pp3c16_8860 Physcomitrium patens HOM05D000088 ORTHO05D002723 1.8e-14 83.2 58 58.6
TAR622G1310 Trochodendron aralioides HOM05D000088 ORTHO05D002723 3.1e-14 82.4 154 38.3
BolC1t01806H Brassica oleracea HOM05D059596 ORTHO05D039216 4.0e-14 82.0 72 56.9
Pp3c5_19480 Physcomitrium patens HOM05D000088 ORTHO05D002723 4.5e-13 78.6 81 46.9
SEGI_00429 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 3.8e-12 75.5 146 30.8
FAN11G3157 Fragaria x ananassa HOM05D015346 ORTHO05D020740 1.6e-10 70.1 41 68.3
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-10 70.1 43 65.1
FAN16G2657 Fragaria x ananassa HOM05D015346 ORTHO05D020740 1.6e-10 70.1 41 68.3
AagrBONN_evm.TU.Sc2ySwM_362.128 Anthoceros agrestis HOM05D000088 ORTHO05D002723 5.1e-09 65.1 99 42.4
CBR_g32000 Chara braunii HOM05D000239 ORTHO05D002723 1.5e-08 63.5 48 56.2
FAN26G0476 Fragaria x ananassa HOM05D013168 ORTHO05D020740 4.3e-08 62.0 33 69.7
Ah.02g129390 Amaranthus hybridus HOM05D000088 ORTHO05D002723 9.6e-08 60.8 72 55.6
Pp3c16_9370 Physcomitrium patens HOM05D000088 ORTHO05D002723 1.3e-07 60.5 55 54.5
Pp3c6_6480 Physcomitrium patens HOM05D000088 ORTHO05D002723 1.3e-07 60.5 56 51.8
Pp3c11_21730 Physcomitrium patens HOM05D000088 ORTHO05D002723 1.1e-06 57.4 51 49.0
SEGI_04335 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 3.1e-06 55.8 33 78.8
Migut.B01744 Erythranthe guttata HOM05D000088 ORTHO05D002723 4.0e-06 55.5 49 46.9
CBR_g24251 Chara braunii HOM05D000088 ORTHO05D002723 5.3e-06 55.1 47 53.2


User provided reference genes

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