Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 9.1e-139 496.9 249 100.0
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 2.0e-106 389.4 201 97.0
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 3.4e-69 265.8 156 87.2
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 1.1e-56 224.2 131 87.8
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 1.1e-56 224.2 131 87.8
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 1.1e-56 224.2 131 87.8
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 1.1e-56 224.2 129 88.4
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 1.5e-56 223.8 131 87.0
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 1.9e-56 223.4 129 88.4
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 7.4e-56 221.5 131 87.0
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 8.1e-55 218.0 129 85.3
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 1.1e-54 217.6 129 84.5
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 3.1e-54 216.1 129 85.3
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 1.2e-53 214.2 129 84.5
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 1.2e-50 204.1 129 80.6
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 4.8e-47 192.2 129 76.0
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 1.1e-43 181.0 130 71.5
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 1.4e-43 180.6 129 68.2
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 1.4e-43 180.6 131 66.4
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 2.5e-43 179.9 129 68.2
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 7.1e-43 178.3 129 65.1
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 9.3e-43 177.9 129 65.1
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 3.5e-42 176.0 129 68.2
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 3.5e-42 176.0 130 68.5
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 3.5e-42 176.0 130 67.7
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 4.6e-42 175.6 129 67.4
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 6.0e-42 175.3 130 68.5
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 7.9e-42 174.9 128 66.4
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 7.9e-42 174.9 128 66.4
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 7.9e-42 174.9 129 66.7
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 1.0e-41 174.5 130 67.7
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 1.0e-41 174.5 129 65.9
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 1.3e-41 174.1 128 64.1
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 2.3e-41 173.3 129 66.7
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 2.3e-41 173.3 129 67.4
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 2.3e-41 173.3 130 66.9
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 3.0e-41 172.9 129 65.9
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 3.0e-41 172.9 130 66.2
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 5.1e-41 172.2 129 65.1
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 6.7e-41 171.8 131 64.1
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 8.7e-41 171.4 128 64.8
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 8.7e-41 171.4 130 66.9
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 8.7e-41 171.4 130 68.5
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 8.7e-41 171.4 130 64.6
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 8.7e-41 171.4 129 64.3
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.7e-41 171.4 130 66.2
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.1e-40 171.0 129 65.9
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 1.5e-40 170.6 129 65.9
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 1.5e-40 170.6 130 67.7
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 1.9e-40 170.2 130 65.4
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 2.5e-40 169.9 129 66.7
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 2.5e-40 169.9 129 65.1
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 2.5e-40 169.9 130 63.1
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-40 169.5 130 65.4
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 3.3e-40 169.5 130 65.4
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 3.3e-40 169.5 129 65.9
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 3.3e-40 169.5 129 64.3
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 3.3e-40 169.5 129 64.3
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 3.3e-40 169.5 129 65.9
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 4.3e-40 169.1 130 65.4
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 5.7e-40 168.7 130 66.9
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 5.7e-40 168.7 129 65.9
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 5.7e-40 168.7 128 66.4
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.4e-40 168.3 130 66.9
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 9.7e-40 167.9 129 65.9
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 9.7e-40 167.9 130 66.9
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 1.3e-39 167.5 130 64.6
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 1.6e-39 167.2 129 63.6
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 1.6e-39 167.2 129 65.1
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 1.6e-39 167.2 130 64.6
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 2.2e-39 166.8 130 66.2
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.2e-39 166.8 128 66.4
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 3.7e-39 166.0 129 65.1
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 4.8e-39 165.6 128 64.1
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 6.3e-39 165.2 129 64.3
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 6.3e-39 165.2 129 64.3
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 6.3e-39 165.2 128 62.5
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 1.4e-38 164.1 130 63.1
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 1.4e-38 164.1 130 63.8
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 1.8e-38 163.7 129 63.6
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 2.4e-38 163.3 130 62.3
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 2.4e-38 163.3 129 64.3
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 5.3e-38 162.2 129 62.8
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 9.0e-38 161.4 129 63.6
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 1.5e-37 160.6 130 62.3
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 2.0e-37 160.2 130 61.5
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.6e-37 159.8 125 64.0
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 3.4e-37 159.5 129 62.0
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 3.4e-37 159.5 130 63.1
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 4.5e-37 159.1 130 61.5
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 7.6e-37 158.3 127 61.4
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 1.3e-36 157.5 129 61.2
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 1.3e-36 157.5 129 58.9
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 1.7e-36 157.1 130 60.8
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 1.7e-36 157.1 129 59.7
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 5.0e-36 155.6 130 60.0
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 6.5e-36 155.2 130 62.3
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 8.5e-36 154.8 128 64.1
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 2.7e-34 149.8 129 61.2
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 4.6e-34 149.1 129 59.7
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 6.1e-34 148.7 127 61.4
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 1.0e-33 147.9 128 60.2
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 3.0e-33 146.4 129 60.5
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 3.0e-33 146.4 131 58.0
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 8.8e-33 144.8 128 60.2
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 1.1e-32 144.4 129 59.7
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.5e-32 143.3 121 62.0
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 1.2e-29 134.4 128 53.9
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 1.0e-28 131.3 102 61.8
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 2.9e-28 129.8 119 59.7
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 3.8e-28 129.4 103 62.1
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 5.0e-28 129.0 124 56.5
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.9e-27 127.1 132 49.2
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 8.2e-23 111.7 129 47.3
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 1.8e-22 110.5 129 47.3
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 1.3e-20 104.4 132 45.5
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 2.2e-20 103.6 122 45.9
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 9.4e-19 98.2 110 45.5
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 2.0e-13 80.5 76 48.7
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.5e-12 75.1 50 68.0
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.5e-12 75.1 50 68.0
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.5e-12 75.1 50 68.0
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.5e-12 75.1 50 68.0
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.5e-12 75.1 50 68.0
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 8.5e-12 75.1 50 68.0
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.2e-11 72.8 50 66.0
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 5.5e-11 72.4 50 66.0
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 7.2e-11 72.0 56 60.7
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 1.2e-10 71.2 50 64.0
A10p20060 Brassica napus HOM05D004541 ORTHO05D006163 2.1e-10 70.5 100 49.0
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 3.6e-10 69.7 50 64.0
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 2.3e-09 67.0 80 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 2.6e-08 63.5 76 42.1
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 4.8e-07 59.3 49 53.1
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 6.3e-07 58.9 50 58.0
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 4.1e-06 56.2 48 52.1
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 4.1e-06 56.2 54 46.3


User provided reference genes

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