Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 3.9e-85 318.2 166 100.0
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 9.3e-39 164.1 115 77.4
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.0e-29 134.0 68 98.5
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.8e-29 133.3 68 97.1
A06p15620 Brassica napus HOM05D003837 ORTHO05D033622 1.2e-22 110.5 71 81.7
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.7e-11 73.6 51 74.5
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 3.7e-11 72.4 51 72.5
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.7e-11 72.4 51 72.5
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 4.8e-11 72.0 51 72.5
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 8.2e-11 71.2 51 70.6
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.8e-10 70.1 51 70.6
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.8e-10 70.1 51 70.6
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.8e-10 70.1 51 70.6
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 2.4e-10 69.7 51 70.6
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.4e-10 69.7 51 70.6
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 3.1e-10 69.3 50 72.0
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.9e-10 68.2 51 68.6
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 9.1e-10 67.8 51 66.7
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.2e-09 67.4 51 66.7
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.2e-09 67.4 51 66.7
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.2e-09 67.4 57 61.4
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.2e-09 67.4 56 62.5
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 1.5e-09 67.0 50 70.0
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.5e-09 67.0 51 64.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.5e-09 67.0 51 64.7
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.0e-09 66.6 51 64.7
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.0e-09 66.6 51 64.7
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 2.6e-09 66.2 51 64.7
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 2.6e-09 66.2 56 60.7
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 3.4e-09 65.9 51 66.7
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.5e-09 65.5 51 62.7
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 5.9e-09 65.1 51 64.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 5.9e-09 65.1 50 66.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 5.9e-09 65.1 51 64.7
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 7.7e-09 64.7 50 64.0
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 7.7e-09 64.7 50 64.0
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 7.7e-09 64.7 50 64.0
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 7.7e-09 64.7 50 64.0
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 7.7e-09 64.7 51 62.7
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 7.7e-09 64.7 51 64.7
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.0e-08 64.3 51 62.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.0e-08 64.3 52 61.5
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 60.8
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 60.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.3e-08 63.9 57 57.9
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.3e-08 63.9 50 64.0
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.3e-08 63.9 50 64.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 60.8
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 60.8
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.3e-08 63.9 50 64.0
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 58.8
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.3e-08 63.9 51 62.7
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-08 63.5 50 62.0
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 50 62.0
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 52 61.5
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.7e-08 63.5 51 62.7
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.7e-08 63.5 54 59.3
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 54 59.3
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 54 59.3
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 54 59.3
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 54 59.3
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-08 63.5 54 59.3
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.7e-08 63.5 51 62.7
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.7e-08 63.5 51 60.8
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.7e-08 63.5 55 60.0
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.7e-08 63.5 51 60.8
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.7e-08 63.5 51 56.9
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-08 63.2 50 64.0
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-08 63.2 50 62.0
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.2e-08 63.2 51 60.8
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.2e-08 63.2 51 60.8
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 2.2e-08 63.2 51 60.8
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.9e-08 62.8 51 58.8
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 2.9e-08 62.8 51 62.7
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 2.9e-08 62.8 50 62.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 3.8e-08 62.4 50 60.0
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.8e-08 62.4 50 62.0
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-08 62.0 51 58.8
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-08 62.0 54 57.4
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 5.0e-08 62.0 50 62.0
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 5.0e-08 62.0 50 60.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 6.5e-08 61.6 50 60.0
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 6.5e-08 61.6 50 58.0
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 6.5e-08 61.6 50 62.0
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 6.5e-08 61.6 51 60.8
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 8.5e-08 61.2 68 50.0
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 8.5e-08 61.2 52 57.7
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 8.5e-08 61.2 52 57.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 8.5e-08 61.2 51 64.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.5e-08 61.2 51 56.9
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.5e-08 61.2 51 56.9
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 8.5e-08 61.2 51 58.8
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 8.5e-08 61.2 50 60.0
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 8.5e-08 61.2 50 60.0
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 8.5e-08 61.2 50 60.0
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 8.5e-08 61.2 58 53.4
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.4e-07 60.5 50 64.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.4e-07 60.5 51 58.8
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.9e-07 60.1 51 60.8
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.9e-07 60.1 50 58.0
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.5e-07 59.7 50 60.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 2.5e-07 59.7 51 58.8
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-07 59.7 51 56.9
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.5e-07 59.7 50 58.0
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 3.2e-07 59.3 51 54.9
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.2e-07 59.3 50 58.0
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 4.2e-07 58.9 56 58.9
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.2e-07 58.9 51 56.9
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 4.2e-07 58.9 53 56.6
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 4.2e-07 58.9 50 58.0
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 5.5e-07 58.5 52 55.8
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 5.5e-07 58.5 65 50.8
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 9.4e-07 57.8 52 53.8
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 9.4e-07 57.8 52 53.8
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 9.4e-07 57.8 52 55.8
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 9.4e-07 57.8 52 55.8
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.6e-06 57.0 52 53.8
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.1e-06 56.6 50 56.0
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 2.1e-06 56.6 51 51.0
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.1e-06 56.6 51 54.9
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.1e-06 56.6 52 53.8
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.7e-06 56.2 66 51.5
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 4.7e-06 55.5 55 54.5
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 4.7e-06 55.5 53 62.3
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.7e-06 55.5 50 52.0
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.1e-06 55.1 49 51.0
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.1e-06 55.1 49 51.0
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 6.1e-06 55.1 54 50.0
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.9e-06 54.7 52 50.0
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 7.9e-06 54.7 53 52.8


User provided reference genes

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