Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 8.8e-125 450.3 224 100.0
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.2e-120 435.6 224 97.8
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-105 385.2 224 89.7
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.0e-72 275.0 213 72.3
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 9.5e-71 270.8 212 70.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.8e-68 261.5 212 69.8
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.7e-67 260.0 212 69.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-67 260.0 212 68.9
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-67 260.0 212 69.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 4.1e-66 255.4 212 69.3
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.6e-65 251.9 212 69.3
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 7.8e-65 251.1 213 69.0
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-64 250.0 212 69.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.1e-64 248.4 233 63.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 6.6e-64 248.1 212 68.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.1e-61 240.7 214 64.5
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.5e-60 236.9 214 64.5
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 3.4e-60 235.7 214 63.1
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.9e-56 222.2 207 61.4
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.4e-53 213.8 197 65.0
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.2e-49 200.7 211 58.8
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.1e-49 199.9 207 58.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.1e-48 195.3 220 55.5
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.1e-41 173.3 224 46.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.5e-41 172.6 232 45.7
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.9e-41 171.4 226 49.1
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.0e-40 171.0 230 47.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.3e-40 169.9 232 46.1
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.9e-39 166.8 232 47.8
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.5e-39 166.4 231 45.5
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.5e-39 166.4 231 45.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.3e-39 166.0 241 44.8
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.6e-39 165.2 231 45.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.6e-39 165.2 220 46.4
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.4e-39 164.9 220 46.4
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 2.1e-38 163.3 232 44.4
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.8e-38 162.9 215 47.9
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.8e-38 162.9 232 44.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 4.8e-38 162.2 232 45.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 6.2e-38 161.8 231 44.6
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 8.1e-38 161.4 226 45.1
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-37 161.0 220 45.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.1e-37 161.0 230 44.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-37 160.6 229 47.2
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-37 160.2 209 47.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.8e-37 160.2 225 46.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.4e-37 159.8 234 44.4
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.1e-37 159.5 223 44.8
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.0e-37 159.1 232 44.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.3e-37 158.7 228 44.7
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 5.3e-37 158.7 232 43.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 6.9e-37 158.3 227 44.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 6.9e-37 158.3 232 44.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 9.0e-37 157.9 228 44.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 9.0e-37 157.9 232 44.8
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.2e-36 157.5 228 45.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.2e-36 157.5 234 45.7
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.0e-36 156.8 223 46.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.0e-36 156.8 228 45.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.6e-36 156.4 232 43.5
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.6e-36 156.4 227 43.2
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.4e-36 156.0 216 45.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.5e-36 155.6 232 44.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.8e-36 155.2 227 43.2
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 5.8e-36 155.2 216 43.5
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.6e-36 154.8 228 45.2
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 7.6e-36 154.8 234 45.7
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.7e-35 153.7 232 43.1
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.2e-35 153.3 229 44.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 2.9e-35 152.9 227 44.1
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 2.9e-35 152.9 228 45.2
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.9e-35 152.9 229 44.1
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 4.9e-35 152.1 237 40.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.4e-34 150.6 231 44.2
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.4e-34 150.6 234 41.9
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.9e-34 150.2 228 41.2
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.9e-34 150.2 218 45.0
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.4e-34 149.8 224 44.2
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.4e-34 149.8 232 42.7
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.2e-34 149.1 224 42.4
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.3e-34 147.9 227 40.1
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 9.3e-34 147.9 241 40.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.2e-33 147.5 215 42.8
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.2e-33 147.5 217 41.9
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.6e-33 147.1 227 43.6
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.6e-33 147.1 228 42.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.1e-33 146.7 231 42.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.6e-33 145.6 227 39.6
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.0e-32 144.4 236 39.0
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.0e-32 144.4 220 40.0
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.0e-32 144.4 219 46.1
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.3e-32 144.1 229 41.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.3e-32 144.1 220 40.0
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.8e-32 143.7 227 42.7
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-32 143.7 212 41.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.8e-32 143.7 235 40.0
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.8e-32 143.7 220 40.0
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.9e-32 142.5 217 40.6
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.1e-32 142.1 220 44.5
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.7e-32 141.4 228 43.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 8.7e-32 141.4 220 42.3
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.1e-31 141.0 233 39.1
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.5e-31 140.6 228 41.2
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.5e-31 140.6 210 42.9
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.5e-31 140.6 242 40.1
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.9e-31 140.2 221 38.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.5e-31 139.8 73 93.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-31 139.8 214 45.3
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-31 139.8 214 45.3
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.5e-31 139.8 230 40.9
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.3e-31 139.0 236 39.8
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.4e-31 138.3 232 42.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.6e-31 137.9 215 42.8
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.3e-30 137.5 221 38.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.6e-30 137.1 221 40.7
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.6e-30 137.1 227 40.1
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 4.8e-30 135.6 225 42.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 8.1e-30 134.8 237 41.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.4e-29 134.0 221 39.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.8e-29 133.7 218 42.7
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.1e-29 132.9 224 40.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 4.0e-29 132.5 225 40.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.3e-29 132.1 224 38.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.2e-28 131.0 154 52.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.5e-28 130.6 215 38.6
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.6e-28 129.8 227 38.3
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.4e-28 129.4 173 46.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.0e-27 127.9 226 37.2
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-27 127.9 228 36.4
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.0e-27 127.9 221 38.5
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.3e-27 127.5 224 40.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-26 124.4 212 37.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-26 124.0 222 39.6
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.4e-26 124.0 144 46.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.9e-26 123.6 146 50.0
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 4.2e-26 122.5 167 42.5
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.2e-26 122.5 148 45.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.2e-25 120.9 225 37.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.7e-25 119.8 216 38.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.7e-25 119.8 183 35.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 4.6e-25 119.0 210 38.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 4.6e-25 119.0 207 40.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.9e-25 118.2 232 37.5
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.0e-24 117.9 136 48.5
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.3e-24 117.5 158 45.6
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.0e-24 116.3 176 43.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.9e-24 115.9 145 45.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.9e-24 115.9 145 45.5
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 6.7e-24 115.2 235 36.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.7e-23 112.1 269 32.7
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.7e-23 112.1 93 57.0
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.8e-22 109.8 212 34.4
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.8e-22 109.0 219 37.0
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.8e-22 109.0 219 35.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.1e-21 107.8 228 35.5
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.4e-21 106.7 176 40.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.1e-21 106.3 215 37.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.1e-21 105.9 52 96.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.2e-20 104.4 156 40.4
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.0e-20 103.6 220 34.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.4e-20 102.8 226 33.2
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.4e-20 102.8 225 35.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 5.9e-20 102.1 198 36.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.0e-19 101.3 228 33.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.0e-19 101.3 225 34.2
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-19 100.5 224 33.5
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.9e-19 99.8 154 40.3
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 8.5e-19 98.2 224 35.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.2e-18 96.3 208 34.6
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 7.2e-18 95.1 134 44.0
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.2e-17 94.4 205 36.6
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.3e-16 90.9 89 52.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.8e-16 90.5 172 36.0
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 2.3e-16 90.1 43 95.3
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 5.1e-16 89.0 135 37.0
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 6.3e-14 82.0 151 37.1
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.8e-13 80.5 135 36.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.9e-13 78.6 69 53.6


User provided reference genes

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