Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 1.7e-180 636.0 333 100.0
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 1.7e-180 636.0 333 100.0
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 8.4e-156 553.9 289 100.0
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 1.9e-152 542.7 289 97.2
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 3.3e-152 542.0 289 97.6
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 8.1e-151 537.3 289 96.5
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 1.1e-147 526.9 289 93.8
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.6e-146 523.1 289 94.1
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 6.0e-146 521.2 289 93.4
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 5.1e-145 518.1 289 93.1
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 2.1e-143 512.7 289 90.0
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 2.3e-137 492.7 289 86.2
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 7.9e-130 467.6 290 82.8
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 1.8e-121 439.9 280 78.2
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 6.7e-121 438.0 280 78.2
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 8.7e-121 437.6 280 76.4
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 4.3e-120 435.3 280 78.9
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 6.3e-119 431.4 280 77.5
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 1.8e-118 429.9 280 75.7
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 3.4e-117 425.6 279 75.3
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 4.5e-117 425.2 280 77.1
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 1.3e-116 423.7 280 75.4
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 1.3e-116 423.7 283 76.3
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.7e-116 423.3 280 73.9
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 5.0e-116 421.8 278 74.1
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 6.5e-116 421.4 280 76.4
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 6.5e-116 421.4 278 74.5
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 1.4e-115 420.2 278 74.5
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 3.2e-115 419.1 280 73.6
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 4.2e-115 418.7 278 73.4
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 9.4e-115 417.5 280 73.9
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 9.4e-115 417.5 279 73.1
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 1.6e-114 416.8 278 73.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 4.6e-114 415.2 294 71.1
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 4.6e-114 415.2 280 73.6
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 6.1e-114 414.8 288 71.9
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 1.0e-113 414.1 278 73.4
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.4e-113 413.7 280 72.9
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 1.4e-113 413.7 280 73.6
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 1.4e-113 413.7 280 72.9
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 1.8e-113 413.3 279 73.1
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 2.3e-113 412.9 278 73.4
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 8.8e-113 411.0 281 71.9
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 8.8e-113 411.0 278 74.5
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 4.3e-112 408.7 280 71.4
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 5.7e-112 408.3 280 72.1
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 5.7e-112 408.3 280 72.1
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.7e-111 406.8 280 72.5
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 9.1e-110 401.0 281 70.5
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 1.2e-109 400.6 278 70.5
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 3.4e-109 399.1 249 77.5
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 5.9e-109 398.3 280 70.7
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 5.9e-109 398.3 280 70.4
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 5.9e-109 398.3 289 70.2
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 5.9e-109 398.3 278 70.1
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 2.9e-108 396.0 278 69.8
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 5.0e-108 395.2 290 69.7
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 5.0e-108 395.2 278 69.1
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 5.5e-107 391.7 280 68.2
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 7.2e-107 391.3 278 68.7
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 3.6e-106 389.0 278 70.5
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 4.7e-106 388.7 287 66.6
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 6.1e-106 388.3 280 67.9
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.8e-105 386.7 283 67.8
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 3.9e-105 385.6 283 67.8
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 1.1e-104 384.0 283 66.1
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 2.0e-104 383.3 280 69.3
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 2.6e-104 382.9 285 69.1
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 7.4e-104 381.3 281 68.0
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 2.8e-103 379.4 284 66.2
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 8.2e-103 377.9 280 67.5
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 1.4e-102 377.1 281 68.0
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 1.4e-102 377.1 280 65.7
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 7.0e-102 374.8 312 61.9
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 1.2e-101 374.0 292 65.4
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.5e-101 373.6 280 67.1
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.0e-101 373.2 245 71.4
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 3.5e-101 372.5 275 67.6
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 3.5e-101 372.5 280 66.1
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 7.7e-101 371.3 264 70.1
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.0e-100 370.9 280 66.8
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 6.1e-98 361.7 275 64.7
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 2.3e-97 359.8 199 92.0
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 2.6e-96 356.3 340 56.5
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 2.6e-96 356.3 236 72.9
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.6e-96 356.3 283 62.2
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 4.4e-96 355.5 281 64.4
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 1.3e-95 354.0 271 64.9
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.1e-94 350.9 249 69.1
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 1.8e-94 350.1 278 64.0
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.4e-94 349.7 278 61.5
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 4.5e-93 345.5 418 47.1
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 4.5e-93 345.5 278 61.2
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 6.5e-92 341.7 236 73.7
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 1.2e-90 337.4 291 61.5
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 8.8e-89 331.3 317 54.3
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.9e-84 316.2 280 55.4
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 8.5e-84 314.7 222 71.2
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 9.4e-83 311.2 280 53.9
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 9.4e-83 311.2 281 54.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.4e-80 302.8 246 63.0
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 6.3e-79 298.5 280 57.1
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 2.7e-69 266.5 222 62.2
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 9.5e-67 258.1 281 51.6
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 5.6e-59 232.3 143 76.9
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 7.5e-56 221.9 274 44.5
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 6.6e-52 208.8 154 64.3
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 1.6e-50 204.1 319 38.9
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 5.8e-48 195.7 181 54.1
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.2e-39 167.2 185 50.8
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 3.2e-38 163.3 332 34.6
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 3.0e-36 156.8 124 59.7
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 5.1e-36 156.0 116 66.4
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 9.6e-35 151.8 167 50.9
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 8.1e-34 148.7 116 65.5
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 7.3e-27 125.6 162 45.1
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 6.2e-26 122.5 179 43.0
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 1.1e-25 121.7 95 60.0
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 7.1e-22 109.0 76 67.1
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 2.3e-12 77.4 147 39.5
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 4.1e-09 66.6 58 56.9
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.0e-08 64.3 58 55.2


User provided reference genes

Program Settings