Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56080 Brassica napus HOM05D006466 ORTHO05D008084 9.3e-82 307.0 173 100.0
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 6.2e-70 267.7 159 90.6
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 2.4e-53 212.6 124 100.0
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 2.4e-37 159.5 106 78.3
C03p59450 Brassica napus HOM05D006466 ORTHO05D008084 1.2e-36 157.1 115 74.8
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.5e-36 156.8 93 98.9
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 8.5e-35 151.0 98 80.6
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 5.5e-26 121.7 88 85.2
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 5.5e-26 121.7 88 85.2
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 5.5e-26 121.7 88 85.2
A01p37510 Brassica napus HOM05D006466 ORTHO05D008084 3.0e-24 115.9 61 93.4
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 4.0e-24 115.5 87 81.6
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 4.0e-24 115.5 87 81.6
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 1.3e-22 110.5 89 83.1
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 9.1e-21 104.4 97 78.4
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 3.5e-20 102.4 86 81.4
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 6.5e-19 98.2 97 73.2
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 2.5e-18 96.3 94 72.3
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.2e-18 95.5 100 70.0
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.2e-18 95.5 100 70.0
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 7.2e-18 94.7 94 68.1
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 9.8e-15 84.3 101 64.4
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 6.8e-08 61.6 108 37.0
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 8.8e-08 61.2 96 37.5
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 8.8e-08 61.2 97 41.2
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.6e-07 59.7 96 39.6
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 7.5e-07 58.2 102 38.2
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 9.8e-07 57.8 93 38.7
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 1.3e-06 57.4 96 33.3
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 1.3e-06 57.4 96 33.3
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 1.7e-06 57.0 92 42.4
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 2.2e-06 56.6 76 43.4
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 2.8e-06 56.2 95 37.9
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 3.7e-06 55.8 96 36.5
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.9e-06 55.5 98 34.7
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 4.9e-06 55.5 98 34.7
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 4.9e-06 55.5 96 39.6
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 6.3e-06 55.1 93 37.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 6.3e-06 55.1 96 39.6
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 8.3e-06 54.7 91 35.2
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 8.3e-06 54.7 98 37.8
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 8.3e-06 54.7 98 34.7
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 8.3e-06 54.7 94 39.4
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 8.3e-06 54.7 81 38.3


User provided reference genes

Program Settings