Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 1.4e-50 202.6 99 100.0
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 4.5e-41 171.0 86 98.8
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 6.8e-37 157.1 82 97.6
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 6.8e-37 157.1 82 97.6
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 1.2e-33 146.4 71 100.0
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 1.2e-33 146.4 71 100.0
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 5.9e-33 144.1 70 100.0
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 1.7e-32 142.5 70 98.6
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 1.7e-32 142.5 70 98.6
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 1.7e-32 142.5 70 98.6
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.7e-32 142.5 70 98.6
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 5.0e-32 141.0 70 97.1
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 5.0e-32 141.0 70 97.1
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 5.0e-32 141.0 70 97.1
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 1.9e-31 139.0 70 95.7
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 5.6e-31 137.5 70 94.3
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 5.6e-31 137.5 70 94.3
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 1.6e-30 136.0 70 92.9
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 1.6e-30 136.0 70 92.9
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 2.1e-30 135.6 70 92.9
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.1e-30 135.6 70 91.4
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.8e-30 135.2 70 92.9
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.8e-30 135.2 70 92.9
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.8e-30 135.2 70 92.9
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.8e-30 135.2 70 92.9
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.6e-30 134.8 70 92.9
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.6e-30 134.8 70 92.9
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 4.7e-30 134.4 70 90.0
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 4.7e-30 134.4 70 90.0
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 4.7e-30 134.4 70 90.0
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 6.1e-30 134.0 70 87.1
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 6.1e-30 134.0 70 91.4
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 8.0e-30 133.7 70 90.0
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 8.0e-30 133.7 70 90.0
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 8.0e-30 133.7 70 91.4
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 8.0e-30 133.7 68 92.6
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 8.0e-30 133.7 70 90.0
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 8.0e-30 133.7 70 91.4
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 8.0e-30 133.7 70 91.4
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.0e-29 133.3 72 86.1
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.0e-29 133.3 70 90.0
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.0e-29 133.3 70 90.0
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.4e-29 132.9 73 86.3
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.8e-29 132.5 70 90.0
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.8e-29 132.5 70 88.6
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 2.3e-29 132.1 70 88.6
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.3e-29 132.1 70 91.4
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.0e-29 131.7 70 88.6
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 3.0e-29 131.7 72 87.5
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 3.0e-29 131.7 70 87.1
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 3.0e-29 131.7 70 88.6
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 4.0e-29 131.3 70 88.6
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 4.0e-29 131.3 70 90.0
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 4.0e-29 131.3 70 88.6
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 4.0e-29 131.3 70 88.6
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 4.0e-29 131.3 70 88.6
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 5.2e-29 131.0 70 87.1
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 5.2e-29 131.0 70 87.1
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 5.2e-29 131.0 89 77.5
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 6.8e-29 130.6 70 88.6
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 6.8e-29 130.6 70 88.6
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 6.8e-29 130.6 70 88.6
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 6.8e-29 130.6 70 88.6
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 8.9e-29 130.2 70 88.6
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 1.5e-28 129.4 71 85.9
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 2.0e-28 129.0 70 87.1
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.0e-28 129.0 70 87.1
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.0e-28 129.0 70 87.1
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.0e-28 129.0 70 87.1
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.0e-28 129.0 70 87.1
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.6e-28 128.6 70 88.6
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 2.6e-28 128.6 70 87.1
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 2.6e-28 128.6 70 87.1
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 4.4e-28 127.9 70 87.1
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 4.4e-28 127.9 77 77.9
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 7.5e-28 127.1 70 85.7
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 7.5e-28 127.1 70 84.3
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 9.8e-28 126.7 70 84.3
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 2.2e-27 125.6 70 82.9
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.2e-27 125.6 70 84.3
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.2e-27 125.6 70 84.3
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 2.9e-27 125.2 70 82.9
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 3.7e-27 124.8 70 85.7
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 4.9e-27 124.4 70 84.3
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 4.9e-27 124.4 72 76.4
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 6.4e-27 124.0 70 82.9
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 8.3e-27 123.6 62 88.7
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.8e-26 122.5 70 78.6
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.8e-26 122.5 70 84.3
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.8e-26 122.5 63 88.9
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 4.1e-26 121.3 100 64.0
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 4.1e-26 121.3 75 76.0
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.6e-25 119.4 72 76.4
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 4.6e-25 117.9 70 80.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.0e-24 116.7 70 77.1
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 6.6e-24 114.0 68 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 3.3e-23 111.7 70 71.4
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 6.2e-22 107.5 68 72.1
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 4.0e-21 104.8 69 73.9
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 2.6e-20 102.1 55 89.1
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 2.2e-19 99.0 70 64.3
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.1e-18 96.7 49 93.9
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 1.6e-17 92.8 49 87.8
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 2.7e-17 92.0 48 89.6
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 4.6e-17 91.3 144 42.4
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.0e-16 90.1 52 80.8
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.7e-16 89.4 44 88.6
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.9e-16 88.2 47 87.2
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 5.0e-16 87.8 48 85.4
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 1.9e-15 85.9 52 76.9
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 8.1e-14 80.5 49 73.5
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 3.1e-13 78.6 38 86.8
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 5.2e-13 77.8 48 75.0
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 5.2e-13 77.8 89 44.9
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 6.8e-13 77.4 62 56.5
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 6.8e-13 77.4 69 59.4
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.2e-12 76.6 49 71.4
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 4.4e-12 74.7 52 67.3
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 5.8e-12 74.3 81 45.7
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.3e-11 73.2 47 72.3
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 1.7e-11 72.8 70 48.6
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-11 70.9 38 89.5
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-11 70.9 38 89.5
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.4e-11 70.9 38 89.5
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.4e-10 68.9 36 91.7
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 5.4e-10 67.8 46 71.7
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 5.4e-10 67.8 37 86.5
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 7.1e-10 67.4 34 88.2
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.1e-09 65.9 42 73.8
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 2.7e-09 65.5 37 81.1
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 1.0e-08 63.5 42 73.8
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 1.7e-08 62.8 36 80.6
BcaC03g15832 Brassica carinata HOM05D005104 ORTHO05D007340 1.6e-06 56.2 29 93.1


User provided reference genes

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