Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 7.6e-106 387.5 245 100.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 7.9e-95 350.9 261 90.4
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 6.5e-81 304.7 245 77.6
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.1e-77 293.9 258 73.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.1e-67 260.8 212 78.8
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 6.8e-62 241.5 251 64.9
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.6e-61 239.6 212 76.4
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.4e-61 239.2 218 72.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.5e-56 223.0 253 63.2
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 5.2e-54 215.3 196 67.3
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 9.8e-53 211.1 196 66.8
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 6.3e-52 208.4 207 67.1
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 6.3e-52 208.4 207 67.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 4.1e-51 205.7 210 65.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 4.1e-51 205.7 210 66.7
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.9e-49 199.5 237 55.7
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.0e-41 174.5 235 51.5
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 4.0e-38 162.5 103 70.9
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 3.4e-37 159.5 103 68.0
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.7e-36 156.0 215 59.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.4e-36 155.2 221 48.4
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.4e-35 154.1 100 70.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.9e-35 153.7 95 71.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.9e-35 153.7 95 71.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.4e-35 152.1 101 64.4
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 5.4e-35 152.1 101 63.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 9.2e-35 151.4 139 57.6
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.0e-34 150.2 99 68.7
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.3e-33 146.7 219 43.4
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 8.6e-33 144.8 81 82.7
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.9e-32 143.7 104 63.5
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 4.3e-32 142.5 211 45.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.5e-32 141.4 192 43.2
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.2e-31 141.0 222 42.3
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.2e-31 141.0 100 66.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.1e-31 140.2 187 52.9
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.1e-31 140.2 176 50.0
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 8.1e-31 138.3 99 64.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.4e-30 137.5 102 65.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.4e-30 137.5 99 64.6
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.8e-30 137.1 99 63.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.3e-30 136.7 100 64.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 4.0e-30 136.0 102 61.8
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 4.0e-30 136.0 205 48.8
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.0e-30 136.0 102 61.8
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.0e-30 136.0 84 71.4
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.5e-29 134.0 83 69.9
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.0e-29 133.7 163 55.8
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.6e-29 133.3 72 83.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.6e-29 133.3 101 64.4
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 3.4e-29 132.9 104 62.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 5.8e-29 132.1 98 62.2
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.8e-29 132.1 210 50.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.8e-29 132.1 211 40.8
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.8e-29 132.1 211 40.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.5e-29 131.7 99 63.6
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.3e-28 131.0 190 40.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.3e-28 131.0 101 64.4
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-28 130.6 229 38.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 8.3e-28 128.3 207 48.8
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-27 127.9 220 37.7
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.9e-27 127.1 188 46.8
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.9e-27 127.1 101 58.4
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 9.2e-27 124.8 84 67.9
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.2e-26 124.4 85 64.7
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.1e-26 123.6 211 42.7
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 2.1e-26 123.6 205 47.8
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 3.5e-26 122.9 227 38.8
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 6.0e-26 122.1 156 49.4
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 6.0e-26 122.1 75 70.7
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.0e-25 121.3 90 60.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.7e-25 120.6 71 74.6
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.3e-25 120.2 176 48.9
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.0e-25 119.8 75 72.0
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.0e-25 119.8 74 73.0
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 5.1e-25 119.0 72 73.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.5e-24 117.5 235 38.3
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.5e-24 117.5 106 55.7
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.9e-24 117.1 105 59.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.3e-24 115.9 188 54.3
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 4.3e-24 115.9 71 70.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 5.6e-24 115.5 196 41.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 5.6e-24 115.5 71 70.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 7.3e-24 115.2 194 39.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 9.5e-24 114.8 198 38.4
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 9.5e-24 114.8 227 37.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.6e-23 114.0 185 47.0
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.6e-23 112.8 174 44.8
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 4.7e-23 112.5 143 58.0
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.1e-22 111.3 101 55.4
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.8e-22 110.5 69 69.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-22 110.2 92 83.7
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 3.1e-22 109.8 192 47.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 4.0e-22 109.4 69 68.1
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.0e-22 109.4 72 70.8
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.6e-21 106.7 184 40.2
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 3.4e-21 106.3 72 69.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 5.8e-21 105.5 184 37.5
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 7.6e-21 105.1 99 48.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 7.6e-21 105.1 190 41.1
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.7e-20 104.0 161 49.1
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.2e-18 97.8 57 80.7
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 7.8e-18 95.1 73 57.5
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.0e-17 94.7 160 35.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 3.0e-17 93.2 205 34.1
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.9e-17 92.8 56 71.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 5.1e-17 92.4 64 67.2
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 4.3e-16 89.4 88 54.5
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.6e-16 88.2 56 71.4
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.6e-15 87.4 133 38.3
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.8e-15 86.7 56 69.6
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.6e-15 86.3 56 73.2
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 8.1e-15 85.1 226 39.4
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.8e-14 84.0 59 67.8
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.2e-14 82.4 92 43.5
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 9.0e-14 81.6 105 42.9
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.0e-13 80.5 69 53.6
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.8e-13 79.0 77 50.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 5.8e-13 79.0 77 50.6
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.8e-13 79.0 82 45.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.2e-12 77.0 111 40.5
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 2.9e-12 76.6 56 62.5
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 4.9e-12 75.9 101 43.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.9e-12 75.9 46 73.9
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 6.4e-12 75.5 71 47.9
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.1e-11 74.7 68 51.5
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.9e-11 73.9 105 46.7
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.4e-11 73.6 71 54.9
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.2e-11 73.2 100 43.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 7.1e-11 72.0 163 35.6
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.2e-10 71.2 58 53.4
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.1e-10 70.5 100 37.0
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.1e-10 70.5 197 40.1
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-10 69.7 42 76.2
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 3.5e-10 69.7 101 37.6
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.5e-10 69.7 46 67.4
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 4.6e-10 69.3 44 68.2
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 7.8e-10 68.6 54 57.4
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.0e-09 68.2 102 42.2
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.0e-09 68.2 211 37.0
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 3.0e-09 66.6 44 70.5
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.0e-09 66.6 54 57.4
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.5e-08 64.3 42 71.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.9e-08 63.9 42 69.0
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 4.3e-08 62.8 117 34.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.3e-08 62.8 61 42.6
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 4.3e-08 62.8 52 51.9
BcaC04g19454 Brassica carinata HOM05D003803 ORTHO05D004456 7.3e-08 62.0 73 87.7
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 7.3e-08 62.0 48 62.5
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.6e-08 61.6 48 60.4
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 9.6e-08 61.6 125 34.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 2.1e-07 60.5 190 31.1
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 6.2e-07 58.9 52 50.0
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.8e-06 57.4 87 36.8
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 6.9e-06 55.5 64 50.0


User provided reference genes

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