Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.9e-110 402.5 199 100.0
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.9e-110 402.5 199 100.0
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.9e-110 402.5 199 100.0
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 3.8e-87 325.1 249 73.5
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.1e-86 323.6 248 73.4
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-86 323.6 253 71.5
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 9.3e-86 320.5 248 73.0
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 6.2e-82 307.8 251 70.5
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 3.4e-80 302.0 247 69.2
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 3.2e-78 295.4 250 68.4
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 2.7e-77 292.4 248 68.5
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 2.5e-75 285.8 225 71.6
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 3.3e-75 285.4 240 67.9
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 7.4e-75 284.3 225 70.7
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 3.8e-71 271.9 254 64.2
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.9e-67 259.6 236 63.1
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 5.9e-64 248.1 253 58.9
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.7e-63 246.5 201 68.7
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 2.9e-63 245.7 234 60.7
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 5.0e-63 245.0 227 61.7
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 6.5e-63 244.6 225 61.8
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 8.5e-63 244.2 218 63.3
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 8.5e-63 244.2 227 62.1
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.4e-62 243.4 239 60.7
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.9e-62 243.0 231 61.5
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.5e-62 242.7 245 58.4
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 2.5e-62 242.7 245 58.4
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 3.2e-62 242.3 229 60.3
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 3.2e-62 242.3 229 60.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 4.2e-62 241.9 245 58.0
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 5.5e-62 241.5 250 58.0
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 5.5e-62 241.5 230 60.9
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 7.2e-62 241.1 211 64.5
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 7.2e-62 241.1 245 58.0
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 2.1e-61 239.6 246 57.7
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 2.7e-61 239.2 208 64.9
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.6e-61 238.8 208 64.4
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 3.6e-61 238.8 246 56.5
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 4.6e-61 238.4 249 56.6
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 6.1e-61 238.0 239 58.6
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.4e-60 236.9 236 58.9
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.8e-60 236.5 244 57.8
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.9e-60 235.3 256 54.7
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 6.7e-60 234.6 220 60.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 6.7e-60 234.6 208 63.9
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 6.7e-60 234.6 221 60.6
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 6.7e-60 234.6 251 56.2
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 8.8e-60 234.2 218 62.4
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.1e-59 233.8 244 56.1
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.5e-59 233.4 222 59.9
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.5e-59 233.4 208 62.5
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 2.6e-59 232.6 216 61.1
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 3.3e-59 232.3 264 54.5
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 4.4e-59 231.9 207 62.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 4.4e-59 231.9 230 57.8
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 4.4e-59 231.9 208 62.0
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 5.7e-59 231.5 205 62.9
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 5.7e-59 231.5 219 59.8
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 7.4e-59 231.1 261 53.3
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 7.4e-59 231.1 246 55.7
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.3e-58 230.3 208 62.0
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.7e-58 228.8 227 58.6
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 4.8e-58 228.4 206 61.7
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 4.8e-58 228.4 249 55.0
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.4e-57 226.9 208 62.0
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.4e-57 226.9 206 61.2
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.4e-57 226.9 207 62.3
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.4e-57 226.9 208 62.0
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.8e-57 226.5 216 61.1
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 6.9e-57 224.6 207 60.9
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 6.9e-57 224.6 207 60.9
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 9.1e-57 224.2 208 61.1
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.3e-55 220.3 248 54.0
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.7e-55 219.9 201 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.1e-54 217.2 204 59.3
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.9e-54 216.5 200 62.0
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.9e-54 216.5 291 48.5
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 4.2e-54 215.3 200 61.5
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 4.2e-54 215.3 227 55.5
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 5.5e-54 214.9 201 60.2
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 7.2e-54 214.5 200 60.5
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 7.2e-54 214.5 236 55.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.6e-53 213.4 211 57.8
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 3.6e-53 212.2 219 56.2
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 3.3e-51 205.7 238 54.6
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.8e-50 202.6 197 57.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 4.1e-49 198.7 238 52.9
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 7.0e-49 198.0 186 60.2
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 7.0e-49 198.0 186 62.4
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 9.1e-49 197.6 227 53.7
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.9e-46 189.9 196 57.7
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.6e-45 185.7 234 50.9
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 6.7e-44 181.4 227 52.4
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 3.3e-43 179.1 164 65.2
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 7.5e-43 177.9 227 52.0
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 2.8e-42 176.0 218 49.5
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.8e-41 173.3 206 48.1
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 9.1e-41 171.0 174 56.9
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.7e-40 169.5 210 46.2
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.5e-40 169.1 174 56.9
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.5e-40 168.7 255 44.7
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.7e-40 167.9 256 44.5
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 2.2e-39 166.4 159 59.7
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.1e-38 164.1 205 48.3
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.6e-37 160.2 82 98.8
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 2.1e-37 159.8 82 98.8
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.7e-37 159.5 155 60.0
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.6e-37 159.1 145 60.7
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.4e-35 152.5 135 61.5
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 2.8e-34 149.4 125 63.2
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 8.3e-26 121.3 111 64.0
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 2.4e-25 119.8 113 60.2
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.4e-25 119.8 108 63.0
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.3e-20 103.2 62 85.5
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 8.9e-20 101.3 97 59.8
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.6e-19 99.8 62 83.9
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 3.4e-19 99.4 62 82.3
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 3.4e-19 99.4 61 83.6
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 1.3e-18 97.4 61 80.3
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 7.8e-16 88.2 73 63.0
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.5e-14 83.2 65 66.2
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 2.8e-13 79.7 125 43.2
CARHR128200 Cardamine hirsuta HOM05D005057 ORTHO05D006570 5.4e-09 65.5 52 71.2
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 3.5e-08 62.8 60 56.7
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 6.0e-08 62.0 86 48.8


User provided reference genes

Program Settings