Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 2.9e-119 433.0 453 100.0
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 3.4e-107 392.9 436 99.1
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 1.0e-100 371.3 437 96.1
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 8.3e-90 335.1 438 92.2
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.6e-88 330.9 438 91.8
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 1.1e-78 298.1 436 88.5
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 9.5e-78 295.0 438 86.5
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 4.2e-65 253.1 452 79.2
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 4.0e-60 236.5 446 79.4
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 3.4e-59 233.4 437 77.6
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 1.3e-50 204.9 437 74.8
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 2.9e-50 203.8 443 78.3
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 4.3e-46 189.9 446 75.1
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 3.9e-39 166.8 444 69.6
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 3.0e-23 114.0 447 60.4
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 4.2e-17 93.6 264 55.7
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.0e-14 84.7 86 52.3
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 2.0e-14 84.7 207 33.8
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 2.6e-14 84.3 266 61.3
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 4.4e-14 83.6 274 69.0
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.4e-14 82.8 94 50.0
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 4.8e-13 80.1 266 49.2
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.1e-12 79.0 274 68.2
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 1.4e-12 78.6 83 49.4
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.4e-12 77.8 73 49.3
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 2.4e-12 77.8 83 49.4
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 3.1e-12 77.4 75 52.0
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 4.1e-12 77.0 75 50.7
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 4.1e-12 77.0 80 51.2
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 7.0e-12 76.3 276 27.2
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 7.0e-12 76.3 276 27.2
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 9.1e-12 75.9 71 52.1
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.2e-11 75.5 79 51.9
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 1.5e-11 75.1 274 67.9
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 2.0e-11 74.7 73 52.1
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 3.5e-11 73.9 228 29.8
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 3.5e-11 73.9 231 30.7
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 3.5e-11 73.9 73 46.6
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 5.9e-11 73.2 76 52.6
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 1.3e-10 72.0 68 52.9
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.3e-10 72.0 271 27.7
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.7e-10 71.6 84 46.4
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 5.0e-10 70.1 68 50.0
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 8.5e-10 69.3 61 55.7
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 1.1e-09 68.9 78 47.4
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 1.5e-09 68.6 82 41.5
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 1.5e-09 68.6 74 48.6
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 1.5e-09 68.6 78 46.2
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.5e-09 68.6 78 46.2
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.5e-09 67.8 61 50.8
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 2.5e-09 67.8 272 71.7
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 3.2e-09 67.4 78 50.0
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 4.2e-09 67.0 229 31.9
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 4.2e-09 67.0 239 26.8
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 5.5e-09 66.6 78 44.9
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 7.2e-09 66.2 71 43.7
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 7.2e-09 66.2 221 27.1
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 9.4e-09 65.9 67 44.8
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.2e-08 65.5 235 28.5
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.6e-08 65.1 227 27.8
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.6e-08 65.1 264 59.1
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.6e-08 65.1 60 55.0
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.6e-08 65.1 73 46.6
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 2.7e-08 64.3 77 45.5
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 2.7e-08 64.3 272 25.7
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 2.7e-08 64.3 72 45.8
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.7e-08 63.5 243 25.1
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 4.7e-08 63.5 74 43.2
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 6.1e-08 63.2 213 28.2
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 6.1e-08 63.2 58 53.4
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.4e-07 62.0 252 24.6
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 2.3e-07 61.2 76 42.1
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 2.3e-07 61.2 271 70.1
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.9e-07 60.5 252 24.6
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 3.9e-07 60.5 68 47.1
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 5.2e-07 60.1 94 36.2
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 5.2e-07 60.1 79 35.4
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 6.7e-07 59.7 61 49.2
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 6.7e-07 59.7 271 25.1
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 6.7e-07 59.7 71 46.5
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 8.8e-07 59.3 224 26.3
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.1e-06 58.9 70 44.3
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.1e-06 58.9 245 28.6
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.1e-06 58.9 249 26.9
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 2.0e-06 58.2 58 48.3
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 2.0e-06 58.2 75 44.0
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 2.6e-06 57.8 77 40.3
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 9.7e-06 55.8 70 41.4


User provided reference genes

Program Settings