Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.6e-288 994.2 498 100.0
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.6e-288 994.2 498 100.0
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.9e-287 989.6 498 99.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.1e-280 968.4 498 97.8
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-279 966.1 498 97.6
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-274 948.0 507 94.7
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.6e-267 925.6 497 93.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-264 915.6 498 92.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 6.2e-264 913.7 492 93.7
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-262 909.4 498 92.2
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.1e-260 902.9 497 92.4
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.4e-260 901.7 498 91.4
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 4.2e-260 901.0 500 91.8
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.0e-259 897.1 495 91.1
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 3.0e-258 894.8 508 89.8
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.7e-258 893.6 497 90.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.5e-257 892.5 499 90.4
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.6e-256 889.0 497 90.1
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.4e-255 885.2 497 88.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-254 882.5 498 89.0
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.5e-254 880.9 497 89.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.1e-252 873.6 493 89.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-250 868.2 496 88.3
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.3e-249 864.4 498 86.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.6e-249 863.2 502 86.5
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.1e-243 845.5 493 86.6
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.9e-236 822.4 495 82.4
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.0e-222 775.8 530 76.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.6e-222 775.4 493 77.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 9.4e-220 766.9 498 76.5
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.4e-218 763.1 489 77.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.3e-217 758.4 491 77.2
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.3e-216 754.2 499 75.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.3e-215 751.1 495 75.8
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-214 748.8 496 74.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.5e-214 748.4 496 75.0
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.5e-214 748.0 485 76.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.7e-214 747.3 494 75.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.0e-213 746.9 491 76.6
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.7e-213 746.1 493 74.6
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.9e-212 742.7 491 74.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.2e-212 741.9 499 73.7
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.2e-212 741.5 493 75.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-211 739.2 496 74.6
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-210 736.5 496 72.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-210 736.5 496 72.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.4e-210 736.5 494 74.3
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 5.2e-210 734.6 490 73.9
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 5.2e-210 734.6 496 75.4
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-209 733.4 494 72.7
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-209 733.4 488 74.4
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-209 733.0 491 74.3
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.6e-209 732.3 490 73.5
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 3.4e-209 731.9 492 73.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.4e-209 731.9 489 73.8
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-209 731.5 491 74.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 7.5e-209 730.7 497 73.0
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.8e-209 730.3 490 73.5
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 9.8e-209 730.3 499 73.9
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.2e-208 729.2 499 74.3
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.2e-208 729.2 499 74.3
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 6.3e-208 727.6 493 73.2
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-207 726.9 491 74.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.4e-207 726.5 484 74.2
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.4e-207 726.5 488 73.4
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.4e-207 725.7 493 73.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.1e-207 725.3 499 73.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 5.4e-207 724.5 489 73.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.1e-207 723.8 500 72.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.2e-206 723.4 494 73.7
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.2e-206 723.4 481 74.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 7.7e-206 720.7 484 73.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.3e-205 719.9 496 72.2
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.2e-205 719.2 495 71.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.2e-205 719.2 495 71.9
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.0e-205 718.0 497 73.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 6.5e-205 717.6 484 73.8
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.1e-204 716.8 512 70.9
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.5e-204 716.5 492 72.0
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.5e-204 715.7 493 71.8
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.6e-203 713.0 479 72.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 8.0e-203 710.7 504 71.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.0e-202 710.3 490 71.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.4e-202 709.9 481 73.0
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 3.0e-202 708.8 481 73.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 6.8e-202 707.6 539 67.9
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 4.4e-201 704.9 492 71.7
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.9e-200 701.4 481 71.9
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.9e-200 701.4 481 71.9
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 8.3e-200 700.7 485 70.9
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.1e-199 698.7 490 71.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.5e-198 695.3 485 70.7
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.0e-197 691.4 530 68.1
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.9e-196 689.5 488 69.7
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-195 686.4 485 71.3
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 8.0e-195 684.1 489 68.9
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 4.0e-194 681.8 478 70.5
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.4e-193 678.7 496 68.5
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 4.4e-193 678.3 491 69.5
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.8e-193 677.2 502 67.5
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.9e-188 662.9 492 69.1
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 3.3e-188 662.1 486 66.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.6e-187 659.8 498 66.9
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 2.8e-187 659.1 458 71.4
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.2e-186 654.8 489 66.7
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.3e-184 650.2 514 65.0
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.2e-184 649.4 487 65.7
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.4e-184 647.9 471 67.9
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-183 647.1 485 66.4
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.2e-183 645.6 488 67.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.2e-182 643.7 499 63.9
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 4.6e-182 641.7 571 60.1
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.9e-180 636.3 501 67.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.9e-180 636.3 492 65.0
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.2e-177 627.1 506 61.3
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.8e-177 624.0 500 65.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.2e-176 622.9 488 65.6
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.9e-176 622.5 489 62.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.7e-176 622.1 492 66.5
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-174 616.7 483 65.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 3.0e-173 612.5 488 63.5
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-171 606.7 483 64.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.2e-169 600.5 491 62.9
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.7e-168 595.5 367 83.1
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.2e-167 590.9 402 73.1
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.3e-164 582.4 505 62.8
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-160 570.5 503 58.3
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 4.3e-156 555.4 378 74.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 9.6e-156 554.3 494 58.1
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 9.6e-156 554.3 453 60.3
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.8e-152 542.3 303 90.1
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.8e-147 526.2 357 73.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 4.8e-147 525.4 396 66.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-146 523.1 397 68.5
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.1e-146 522.7 548 53.8
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.9e-144 516.2 366 72.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-143 512.7 343 75.2
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 3.7e-139 499.2 393 66.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-128 464.2 471 53.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.9e-127 460.3 356 67.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.9e-120 436.4 314 71.7
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.8e-117 424.9 405 58.0
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-113 413.7 280 73.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.7e-112 410.6 280 74.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-111 406.4 272 74.3
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.0e-85 321.6 233 70.8
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 5.2e-85 319.3 465 39.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.9e-79 300.8 250 65.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.9e-77 292.0 187 76.5
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-74 284.3 181 75.1
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.5e-71 273.9 206 70.4
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.4e-68 263.5 138 94.9
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.7e-62 243.0 200 61.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-53 214.9 229 51.5
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.2e-52 211.8 134 76.9
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 3.8e-51 206.8 153 70.6
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 8.4e-51 205.7 256 45.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 2.4e-50 204.1 136 74.3
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.6e-49 199.9 126 74.6
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 3.1e-45 187.2 265 46.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.5e-41 173.7 114 72.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.1e-40 169.9 125 68.8
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-36 158.7 114 69.3
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 6.4e-35 152.9 93 74.2
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 6.4e-35 152.9 93 74.2
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-34 152.1 165 50.3
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 3.5e-25 120.6 69 82.6
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 3.0e-24 117.5 63 88.9
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.3e-23 113.6 63 84.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.8e-21 108.2 72 70.8
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.8e-21 108.2 109 57.8
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 3.1e-21 107.5 91 62.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.5e-20 105.1 65 80.0
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 7.6e-20 102.8 67 71.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.3e-19 102.1 65 76.9
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.8e-19 100.5 65 75.4
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-18 98.6 65 78.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.0e-16 92.4 77 64.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 3.7e-14 84.0 184 33.2
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.9e-12 76.6 48 64.6
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 2.7e-09 67.8 48 68.8
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 1.1e-07 62.4 37 81.1
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 1.5e-07 62.0 48 75.0
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 3.3e-07 60.8 36 80.6
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 3.3e-07 60.8 36 80.6


User provided reference genes

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