Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 5.9e-200 700.7 357 100.0
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 5.9e-200 700.7 357 100.0
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 5.9e-200 700.7 357 100.0
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 7.7e-200 700.3 357 99.7
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.9e-199 698.4 357 99.4
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 2.5e-198 695.3 357 98.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 5.7e-195 684.1 357 96.6
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 9.8e-195 683.3 357 96.4
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 5.9e-192 674.1 360 95.8
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 6.8e-188 660.6 387 89.7
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 2.9e-186 655.2 358 93.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 6.4e-186 654.1 362 93.1
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 9.5e-182 640.2 359 91.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.9e-175 618.2 356 87.4
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.4e-161 573.2 348 82.5
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 2.8e-157 558.9 349 79.4
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 3.6e-157 558.5 349 78.8
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 5.3e-156 554.7 349 77.9
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 9.0e-156 553.9 357 78.2
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.2e-155 553.5 349 78.8
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.2e-155 553.5 343 79.6
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 2.6e-155 552.4 349 77.7
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 4.5e-155 551.6 349 78.2
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 5.8e-155 551.2 353 77.9
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 7.6e-155 550.8 358 76.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.8e-154 548.5 346 78.3
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.4e-153 546.6 343 79.3
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.4e-153 546.6 357 76.5
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 4.2e-153 545.0 355 75.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 9.3e-153 543.9 357 75.1
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.2e-152 543.5 353 75.4
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.1e-152 542.7 356 75.3
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.5e-152 542.0 343 78.7
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 4.6e-152 541.6 343 78.7
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 7.9e-152 540.8 352 75.0
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 7.9e-152 540.8 351 76.4
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.0e-151 540.4 348 75.0
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.7e-151 539.7 356 75.0
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.9e-151 538.5 348 74.7
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 6.6e-151 537.7 351 75.8
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.1e-150 537.0 346 77.5
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.1e-150 537.0 347 75.8
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.5e-150 536.6 350 74.9
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.5e-150 536.6 354 74.9
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.9e-150 536.2 346 75.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 3.3e-150 535.4 347 75.2
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.3e-150 535.4 355 75.8
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 7.4e-150 534.3 357 74.5
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 9.6e-150 533.9 350 76.0
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 9.6e-150 533.9 343 76.7
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 2.8e-149 532.3 344 75.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 8.1e-149 530.8 358 74.9
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.1e-148 530.4 351 74.4
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.4e-148 530.0 356 74.7
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 5.3e-148 528.1 351 74.1
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 6.9e-148 527.7 340 77.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.5e-147 526.6 346 75.1
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 2.6e-147 525.8 351 76.9
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 4.5e-147 525.0 342 74.0
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.3e-146 523.5 342 73.7
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.7e-146 523.1 350 75.1
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.7e-146 523.1 354 72.9
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 2.2e-146 522.7 349 73.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.2e-146 522.7 358 74.3
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.2e-144 516.9 350 73.4
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 3.5e-144 515.4 348 72.7
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.6e-144 515.0 345 74.8
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 7.9e-144 514.2 349 72.2
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.8e-143 513.1 346 72.5
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 5.1e-143 511.5 343 73.5
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 8.7e-143 510.8 356 72.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 2.5e-142 509.2 343 71.4
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 4.3e-142 508.4 356 70.5
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.3e-141 506.9 338 74.0
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.3e-141 506.9 339 73.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 6.2e-141 504.6 342 71.9
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 6.2e-141 504.6 380 67.6
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 6.2e-141 504.6 339 72.3
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.4e-140 503.4 256 96.9
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.8e-140 503.1 345 71.0
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 4.0e-140 501.9 354 70.6
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 4.0e-140 501.9 256 96.1
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 4.5e-139 498.4 372 67.2
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 3.2e-137 492.3 295 80.0
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 7.1e-137 491.1 352 68.5
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.5e-136 488.8 352 69.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 7.9e-136 487.6 377 66.3
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.3e-133 480.3 348 69.3
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.3e-132 474.9 304 80.6
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 4.5e-131 471.9 348 68.1
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.4e-129 466.8 379 65.2
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.5e-129 466.1 329 71.7
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 3.2e-129 465.7 300 75.0
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.2e-128 463.8 297 79.1
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 3.6e-128 462.2 395 61.5
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 6.1e-128 461.5 325 71.1
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 7.9e-128 461.1 341 70.1
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.3e-127 460.3 350 69.1
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.5e-126 456.1 339 70.8
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 7.4e-126 454.5 304 75.7
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.6e-125 453.4 371 64.2
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.6e-125 453.4 347 65.4
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.2e-125 453.0 313 71.6
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.2e-125 453.0 280 76.4
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 6.3e-125 451.4 304 71.1
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.1e-124 450.7 339 69.6
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.9e-124 448.0 352 67.3
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.4e-121 440.3 324 69.4
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.3e-117 427.2 314 68.5
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.4e-116 422.9 296 70.9
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.4e-113 413.7 296 70.6
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 6.7e-111 404.8 296 69.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 6.7e-111 404.8 361 60.7
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.2e-109 399.8 307 67.4
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 5.5e-105 385.2 230 80.0
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.3e-103 379.8 192 97.4
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.2e-102 377.5 257 75.9
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.6e-102 376.3 344 54.4
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 5.7e-102 375.2 399 55.6
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.7e-101 373.6 342 55.3
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 9.1e-100 367.9 255 74.5
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.2e-98 363.2 253 71.9
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 5.0e-98 362.1 261 71.6
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.0e-95 354.4 252 74.2
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.8e-95 353.6 332 55.1
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 3.4e-94 349.4 310 59.7
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 4.8e-93 345.5 349 53.0
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 6.5e-90 335.1 234 72.2
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.5e-86 323.9 277 56.7
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.3e-85 320.9 222 73.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.1e-80 303.5 259 61.4
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 2.8e-80 303.1 325 48.3
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.4e-79 300.8 166 95.8
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.7e-78 295.4 226 66.4
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 5.4e-76 288.9 195 73.8
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 3.4e-62 243.0 191 67.0
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.3e-55 220.3 363 39.4
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.4e-44 184.5 184 58.2
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.5e-41 174.5 100 85.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-36 157.5 75 94.7
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.4e-36 157.1 75 97.3
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 3.2e-36 156.8 76 97.4
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 4.2e-36 156.4 75 94.7
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 4.2e-36 156.4 75 94.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-29 134.8 94 76.6
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.3e-29 134.8 63 96.8
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.1e-24 117.5 136 50.7
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.8e-07 61.2 40 75.0
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 1.2e-06 58.5 46 56.5


User provided reference genes

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