Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p52300 Brassica napus HOM05D001444 ORTHO05D012314 3.3e-53 211.5 108 100.0
BcaC05g27912 Brassica carinata HOM05D001444 ORTHO05D003766 1.3e-46 189.5 101 97.0
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 1.3e-44 183.0 100 94.0
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 3.7e-44 181.4 99 94.9
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 6.2e-44 180.6 100 93.0
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 6.2e-44 180.6 100 93.0
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 8.2e-44 180.3 100 92.0
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 8.2e-44 180.3 100 92.0
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 8.2e-44 180.3 100 92.0
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 1.1e-43 179.9 100 93.0
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.8e-43 179.1 100 92.0
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 2.4e-43 178.7 100 92.0
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 4.0e-43 177.9 100 91.0
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 7.6e-42 173.7 99 89.9
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 3.5e-39 164.9 100 85.0
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 6.0e-39 164.1 100 83.0
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 1.8e-38 162.5 100 83.0
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 1.8e-38 162.5 105 79.0
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 3.0e-38 161.8 100 82.0
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 3.0e-38 161.8 100 82.0
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 5.1e-38 161.0 100 82.0
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 5.1e-38 161.0 100 82.0
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 5.1e-38 161.0 100 82.0
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 5.1e-38 161.0 100 82.0
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 5.1e-38 161.0 100 82.0
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 8.7e-38 160.2 100 84.0
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 1.5e-37 159.5 100 81.0
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.9e-37 159.1 99 82.8
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.9e-37 159.1 99 82.8
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 1.9e-37 159.1 100 81.0
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 2.5e-37 158.7 100 81.0
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 2.5e-37 158.7 100 81.0
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 2.5e-37 158.7 100 82.0
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 3.3e-37 158.3 100 81.0
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 4.3e-37 157.9 100 81.0
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 4.3e-37 157.9 100 81.0
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 4.3e-37 157.9 100 81.0
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 4.3e-37 157.9 100 81.0
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 4.3e-37 157.9 100 81.0
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 4.3e-37 157.9 100 81.0
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 7.4e-37 157.1 98 83.7
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 7.4e-37 157.1 98 83.7
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 7.4e-37 157.1 100 81.0
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 9.7e-37 156.8 100 80.0
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 9.7e-37 156.8 100 81.0
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 9.7e-37 156.8 100 80.0
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 1.3e-36 156.4 100 80.0
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.3e-36 156.4 100 81.0
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 1.3e-36 156.4 100 80.0
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 1.3e-36 156.4 100 80.0
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 1.3e-36 156.4 100 80.0
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 1.6e-36 156.0 100 80.0
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 1.6e-36 156.0 100 79.0
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 2.2e-36 155.6 100 80.0
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 2.2e-36 155.6 100 79.0
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 2.2e-36 155.6 100 80.0
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 2.2e-36 155.6 100 80.0
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 2.2e-36 155.6 100 80.0
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.8e-36 155.2 100 80.0
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.8e-36 155.2 100 80.0
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.8e-36 155.2 100 80.0
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 3.7e-36 154.8 100 80.0
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 3.7e-36 154.8 97 80.4
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 3.7e-36 154.8 100 80.0
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 3.7e-36 154.8 100 79.0
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 3.7e-36 154.8 100 79.0
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 4.8e-36 154.5 100 80.0
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 4.8e-36 154.5 100 80.0
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 4.8e-36 154.5 100 79.0
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 4.8e-36 154.5 100 79.0
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 4.8e-36 154.5 100 79.0
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 6.3e-36 154.1 100 77.0
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 8.2e-36 153.7 100 79.0
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 8.2e-36 153.7 100 80.0
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 8.2e-36 153.7 100 80.0
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 8.2e-36 153.7 100 78.0
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 1.1e-35 153.3 100 79.0
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.1e-35 153.3 100 79.0
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.1e-35 153.3 100 79.0
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.1e-35 153.3 100 79.0
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.1e-35 153.3 100 79.0
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 1.1e-35 153.3 100 79.0
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 1.4e-35 152.9 99 78.8
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 1.4e-35 152.9 100 79.0
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 2.4e-35 152.1 100 78.0
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 9.0e-35 150.2 100 78.0
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 9.0e-35 150.2 100 77.0
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 1.5e-34 149.4 100 77.0
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 1.5e-34 149.4 100 77.0
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 2.0e-34 149.1 118 71.2
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 2.6e-34 148.7 100 76.0
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.6e-34 148.7 100 75.0
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 2.6e-34 148.7 100 76.0
Gohir.D09G069933 Gossypium hirsutum HOM05D001444 ORTHO05D012314 4.5e-34 147.9 97 79.4
Gorai.006G084200 Gossypium raimondii HOM05D001444 ORTHO05D012314 4.5e-34 147.9 97 79.4
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 7.6e-34 147.1 100 75.0
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 1.7e-33 146.0 99 76.8
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 3.8e-33 144.8 100 73.0
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 5.0e-33 144.4 105 68.6
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 5.0e-33 144.4 105 68.6
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 5.0e-33 144.4 96 79.2
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 1.1e-32 143.3 100 73.0
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 3.2e-32 141.7 104 72.1
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 7.2e-32 140.6 100 71.0
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 4.6e-31 137.9 96 76.0
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 2.3e-30 135.6 100 71.0
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 1.5e-29 132.9 100 67.0
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 4.3e-29 131.3 84 83.3
Nitab4.5_0003894g0050 Nicotiana tabacum HOM05D001444 ORTHO05D012314 4.3e-29 131.3 84 82.1
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 5.7e-29 131.0 169 47.9
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 1.7e-28 129.4 152 52.0
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 1.4e-27 126.3 100 66.0
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 1.8e-27 125.9 96 66.7
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 3.1e-27 125.2 101 67.3
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 4.1e-27 124.8 76 92.1
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 9.1e-27 123.6 100 64.0
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.5e-26 121.3 100 62.0
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 5.9e-26 120.9 100 62.0
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 5.9e-26 120.9 100 62.0
Mapoly0002s0303 Marchantia polymorpha HOM05D001444 ORTHO05D003766 5.9e-26 120.9 100 62.0
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 1.3e-25 119.8 100 60.0
BcaC04g21082 Brassica carinata HOM05D001444 ORTHO05D014980 1.7e-25 119.4 69 94.2
AL881U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.1e-24 116.7 91 67.0
Zm00001eb014570 Zea mays HOM05D001444 ORTHO05D003766 1.9e-24 115.9 84 73.8
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 1.6e-23 112.8 92 63.0
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 4.7e-23 111.3 68 86.8
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 7.9e-23 110.5 100 55.0
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 3.0e-22 108.6 100 57.0
Gohir.D05G286400 Gossypium hirsutum HOM05D001444 ORTHO05D012314 3.3e-21 105.1 71 76.1
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 7.4e-21 104.0 68 79.4
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 1.7e-20 102.8 67 80.6
Gohir.D08G105000 Gossypium hirsutum HOM05D000282 ORTHO05D012314 2.2e-20 102.4 71 74.6
VMungo0251G2141 Vigna mungo HOM05D001444 ORTHO05D012314 2.4e-19 99.0 77 71.4
MCO16G463 Micromonas commoda HOM05D001444 ORTHO05D003766 2.6e-18 95.5 92 52.2
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 1.3e-17 93.2 100 53.0
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 2.2e-17 92.4 100 51.0
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 2.2e-17 92.4 59 89.8
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 2.9e-17 92.0 99 54.5
Peaxi162Scf01208g00006 Petunia axillaris HOM05D001444 ORTHO05D012314 3.8e-17 91.7 98 54.1
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 5.0e-17 91.3 110 51.8
CAN.G167.15 Capsicum annuum HOM05D001444 ORTHO05D003766 8.5e-17 90.5 100 52.0
Glyma.06G236800 Glycine max HOM05D001444 ORTHO05D003766 7.2e-16 87.4 51 86.3
Nitab4.5_0000155g0080 Nicotiana tabacum HOM05D001444 ORTHO05D014980 1.6e-15 86.3 66 74.2
Gorai.007G272600 Gossypium raimondii HOM05D000282 ORTHO05D012314 4.7e-15 84.7 62 72.6
Gohir.D06G054700 Gossypium hirsutum HOM05D001444 ORTHO05D012314 8.8e-14 80.5 55 72.7
Cre06.g281350 Chlamydomonas reinhardtii HOM05D001444 ORTHO05D003766 2.0e-13 79.3 88 53.4
Haze_26118 Corylus avellana HOM05D001444 ORTHO05D003766 2.0e-13 79.3 91 47.3
Gohir.D03G117533 Gossypium hirsutum HOM05D001444 ORTHO05D012314 4.4e-13 78.2 55 70.9
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 9.7e-13 77.0 56 69.6
AL5G41580 Arabidopsis lyrata HOM05D001444 ORTHO05D012314 2.8e-12 75.5 47 85.1
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.8e-12 75.5 56 67.9
SHI18059 Sapria himalayana HOM05D001444 ORTHO05D003766 3.7e-12 75.1 93 50.5
C06p06270 Brassica napus HOM05D001444 ORTHO05D003766 2.4e-11 72.4 82 52.4
Cfa024900 Carpinus fangiana HOM05D001444 ORTHO05D003766 1.2e-10 70.1 88 44.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.6e-10 68.9 54 64.8
QL03p039928 Quercus lobata HOM05D001444 ORTHO05D003766 2.6e-10 68.9 96 46.9
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 1.0e-09 67.0 52 67.3
BolC6t35734H Brassica oleracea HOM05D001444 ORTHO05D003766 1.0e-09 67.0 68 57.4
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 1.3e-09 66.6 52 65.4
Atru.chr2.221 Acer truncatum HOM05D001444 ORTHO05D003766 1.7e-09 66.2 51 72.5
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 1.7e-09 66.2 89 47.2
Gohir.D11G253600 Gossypium hirsutum HOM05D000282 ORTHO05D012314 2.2e-09 65.9 45 73.3
VMungo0331G1487 Vigna mungo HOM05D000002 ORTHO05D019055 3.8e-09 65.1 39 76.9
QL03p013604 Quercus lobata HOM05D001444 ORTHO05D003766 6.5e-09 64.3 62 53.2


User provided reference genes

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