Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p52090 Brassica napus HOM05D019133 ORTHO05D020186 1.3e-35 152.5 77 100.0
BolC3t17128H Brassica oleracea HOM05D019133 ORTHO05D020186 8.7e-32 139.8 79 92.4
C01p28730 Brassica napus HOM05D019133 ORTHO05D020186 1.9e-31 138.7 79 92.4
BolC1t02800H Brassica oleracea HOM05D019133 ORTHO05D020186 1.3e-30 136.0 79 91.1
BolC9t58074H Brassica oleracea HOM05D019133 ORTHO05D020186 4.9e-27 124.0 62 98.4
C03p48510 Brassica napus HOM05D019133 ORTHO05D020186 3.2e-26 121.3 62 96.8
BraA08t32162Z Brassica rapa HOM05D019133 ORTHO05D020186 1.8e-13 79.0 50 82.0
BcaB05g22113 Brassica carinata HOM05D002523 ORTHO05D002951 2.0e-12 75.5 82 56.1
AL8G29250 Arabidopsis lyrata HOM05D002523 ORTHO05D002951 2.6e-12 75.1 82 54.9
Thhalv10013580m.g Eutrema salsugineum HOM05D002523 ORTHO05D002951 2.6e-12 75.1 82 54.9
Sp6g16150 Schrenkiella parvula HOM05D002523 ORTHO05D002951 2.6e-12 75.1 82 54.9
AT5G54130 Arabidopsis thaliana HOM05D002523 ORTHO05D002951 1.0e-11 73.2 82 53.7
BcaC03g14326 Brassica carinata HOM05D002523 ORTHO05D002951 1.0e-11 73.2 82 53.7
A02p10550 Brassica napus HOM05D002523 ORTHO05D002951 1.0e-11 73.2 82 53.7
C02p17610 Brassica napus HOM05D002523 ORTHO05D002951 1.0e-11 73.2 82 53.7
BolC2t07892H Brassica oleracea HOM05D002523 ORTHO05D002951 1.0e-11 73.2 82 53.7
BraA02t06119Z Brassica rapa HOM05D002523 ORTHO05D002951 1.0e-11 73.2 82 53.7
Aa31LG3G9910 Aethionema arabicum HOM05D002523 ORTHO05D002951 1.3e-11 72.8 82 53.7
Carub.0008s1442 Capsella rubella HOM05D002523 ORTHO05D002951 1.3e-11 72.8 82 52.4
BcaB08g35762 Brassica carinata HOM05D002523 ORTHO05D002951 3.8e-11 71.2 81 53.1
C09p44240 Brassica napus HOM05D002523 ORTHO05D002951 3.8e-11 71.2 81 53.1
BcaC04g20384 Brassica carinata HOM05D002523 ORTHO05D002951 1.4e-10 69.3 81 51.9
A10p11410 Brassica napus HOM05D002523 ORTHO05D002951 1.4e-10 69.3 81 51.9
BolC9t57297H Brassica oleracea HOM05D002523 ORTHO05D002951 1.4e-10 69.3 81 51.9
BraA10t43235Z Brassica rapa HOM05D002523 ORTHO05D002951 1.4e-10 69.3 81 51.9
MELO3C024866.2 Cucumis melo HOM05D002523 ORTHO05D002951 4.6e-09 64.3 83 45.8
CsaV3_4G008700 Cucumis sativus L. HOM05D002523 ORTHO05D002951 1.8e-08 62.4 82 46.3
THA.LOC104825163 Tarenaya hassleriana HOM05D002523 ORTHO05D002951 2.3e-08 62.0 87 43.7
THA.LOC104799939 Tarenaya hassleriana HOM05D002523 ORTHO05D002951 3.0e-08 61.6 89 42.7
Gohir.A11G102500 Gossypium hirsutum HOM05D002523 ORTHO05D002951 6.7e-08 60.5 81 39.5
Gohir.D11G107000 Gossypium hirsutum HOM05D002523 ORTHO05D002951 6.7e-08 60.5 81 39.5
Gorai.007G114600 Gossypium raimondii HOM05D002523 ORTHO05D002951 6.7e-08 60.5 81 39.5
ClCG07G009670 Citrullus lanatus HOM05D002523 ORTHO05D002951 1.1e-07 59.7 82 43.9
Cpa.g.sc3.171 Carica papaya HOM05D002523 ORTHO05D002951 1.5e-07 59.3 86 41.9
GSVIVG01038668001 Vitis vinifera HOM05D002523 ORTHO05D002951 1.5e-07 59.3 87 43.7
Prupe.2G320700 Prunus persica HOM05D002523 ORTHO05D002951 2.0e-07 58.9 76 44.7
FAN01G3084 Fragaria x ananassa HOM05D002523 ORTHO05D002951 3.3e-07 58.2 80 45.0
Potri.012G007600 Populus trichocarpa HOM05D002523 ORTHO05D002951 3.3e-07 58.2 86 41.9
TPR.G35917 Trifolium pratense HOM05D002523 ORTHO05D002951 3.3e-07 58.2 80 45.0
FvH4_7g33080 Fragaria vesca HOM05D002523 ORTHO05D002951 4.4e-07 57.8 80 45.0
FAN03G0988 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.4e-07 57.8 81 44.4
FAN10G1524 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.4e-07 57.8 71 46.5
FAN10G3000 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.4e-07 57.8 71 46.5
Sed0017970 Sechium edule HOM05D002523 ORTHO05D002951 4.4e-07 57.8 73 42.5
Hund09728 Selenicereus undatus HOM05D002523 ORTHO05D002951 4.4e-07 57.8 89 42.7
CSS0049255 Camellia sinensis var. sinensis HOM05D002523 ORTHO05D002951 7.4e-07 57.0 86 43.0
Psat5g070800 Pisum sativum HOM05D002523 ORTHO05D002951 7.4e-07 57.0 86 41.9
vmacro06458 Vaccinium macrocarpon HOM05D002523 ORTHO05D002951 9.7e-07 56.6 85 42.4
Actinidia18687 Actinidia chinensis HOM05D002523 ORTHO05D002951 1.3e-06 56.2 89 40.4
Glyma.04G226800 Glycine max HOM05D002523 ORTHO05D002951 1.3e-06 56.2 75 42.7
Lj1g0021654 Lotus japonicus HOM05D002523 ORTHO05D002951 1.3e-06 56.2 82 45.1
QL09p006507 Quercus lobata HOM05D002523 ORTHO05D002951 1.3e-06 56.2 81 46.9
RcHm_v2.0_Chr1g0383111 Rosa chinensis HOM05D002523 ORTHO05D002951 1.3e-06 56.2 80 41.2
Sabra15G0002700 Salix brachista HOM05D002523 ORTHO05D002951 1.3e-06 56.2 83 42.2
Actinidia34279 Actinidia chinensis HOM05D002523 ORTHO05D002951 1.7e-06 55.8 88 39.8
Ca_16793_v3 Cicer arietinum L. HOM05D002523 ORTHO05D002951 2.8e-06 55.1 86 41.9
Ca_16809_v3 Cicer arietinum L. HOM05D002523 ORTHO05D002951 2.8e-06 55.1 86 41.9
Nn1g00472 Nelumbo nucifera HOM05D002523 ORTHO05D002951 2.8e-06 55.1 78 39.7
Potri.015G004200 Populus trichocarpa HOM05D002523 ORTHO05D002951 2.8e-06 55.1 85 41.2
Rhsim03G0217100 Rhododendron simsii HOM05D002523 ORTHO05D002951 2.8e-06 55.1 76 43.4
Glyma.06G138200 Glycine max HOM05D002523 ORTHO05D002951 3.7e-06 54.7 75 42.7
Hma1.2p1_0115F.1_g055610 Hydrangea macrophylla HOM05D002523 ORTHO05D002951 3.7e-06 54.7 85 43.5
Lalb_Chr11g0067501 Lupinus albus HOM05D002523 ORTHO05D002951 3.7e-06 54.7 85 41.2
MD07G1301900 Malus domestica HOM05D002523 ORTHO05D002951 3.7e-06 54.7 76 43.4
SGA_v2.0_scaffold1362G53926 Striga asiatica HOM05D002523 ORTHO05D002951 3.7e-06 54.7 86 39.5
Thecc.03G210800 Theobroma cacao HOM05D002523 ORTHO05D002951 3.7e-06 54.7 79 44.3
Ah.07g204360 Amaranthus hybridus HOM05D002523 ORTHO05D002951 4.8e-06 54.3 79 39.2
Lalb_Chr08g0239491 Lupinus albus HOM05D002523 ORTHO05D002951 4.8e-06 54.3 84 41.7
Hma1.2p1_1867F.1_g305910 Hydrangea macrophylla HOM05D002523 ORTHO05D002951 6.3e-06 53.9 86 39.5
Nitab4.5_0010776g0010 Nicotiana tabacum HOM05D002523 ORTHO05D002951 6.3e-06 53.9 86 39.5
Peaxi162Scf00542g00038 Petunia axillaris HOM05D002523 ORTHO05D002951 6.3e-06 53.9 83 42.2
SGA_v2.0_scaffold18G08481 Striga asiatica HOM05D002523 ORTHO05D002951 6.3e-06 53.9 82 40.2
TAR375G0808 Trochodendron aralioides HOM05D002523 ORTHO05D002951 6.3e-06 53.9 79 39.2
Actinidia08709 Actinidia chinensis HOM05D002523 ORTHO05D002951 8.2e-06 53.5 84 39.3
CSS0009553 Camellia sinensis var. sinensis HOM05D002523 ORTHO05D002951 8.2e-06 53.5 69 44.9
TWI39G0415 Tripterygium wilfordii HOM05D002523 ORTHO05D002951 8.2e-06 53.5 86 41.9


User provided reference genes

Program Settings