Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 7.9e-124 447.2 239 100.0
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-63 247.3 146 93.2
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.0e-62 244.2 146 91.8
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-53 214.2 149 84.6
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 3.6e-52 209.1 146 82.9
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 1.8e-51 206.8 144 84.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 6.8e-51 204.9 150 82.0
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.9e-48 196.8 146 75.3
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 2.4e-48 196.4 149 77.9
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 5.1e-46 188.7 149 75.2
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 6.6e-46 188.3 148 79.7
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 6.6e-46 188.3 146 74.7
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 2.5e-45 186.4 148 76.4
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 2.5e-45 186.4 148 76.4
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 2.5e-45 186.4 148 76.4
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 5.6e-45 185.3 148 75.7
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 7.3e-45 184.9 150 75.3
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 2.1e-44 183.3 148 76.4
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 1.3e-41 174.1 149 71.1
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 6.4e-41 171.8 147 68.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 4.6e-39 165.6 149 68.5
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 4.9e-33 145.6 152 60.5
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-29 134.4 132 62.9
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-28 130.2 146 59.6
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.8e-28 129.8 150 56.7
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 4.0e-27 125.9 142 62.0
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 5.3e-27 125.6 146 58.2
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.9e-25 119.8 132 59.8
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 4.6e-23 112.5 177 49.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.8e-22 110.5 151 47.0
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 8.7e-22 108.2 151 47.0
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.9e-21 107.1 156 49.4
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-21 106.7 147 49.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-21 106.7 147 49.7
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 2.5e-21 106.7 154 44.2
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 4.3e-21 105.9 152 46.1
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 9.6e-21 104.8 152 48.0
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 9.6e-21 104.8 151 47.0
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.3e-20 104.4 149 48.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.3e-20 104.4 157 45.9
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.6e-20 104.0 157 47.1
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.8e-20 103.2 143 46.9
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 2.8e-20 103.2 156 47.4
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.8e-20 103.2 149 50.3
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.8e-20 103.2 153 45.8
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 3.7e-20 102.8 197 44.2
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.7e-20 102.8 141 47.5
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 6.2e-20 102.1 154 47.4
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 8.2e-20 101.7 147 47.6
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 8.2e-20 101.7 154 46.1
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.1e-19 101.3 157 45.2
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 3.1e-19 99.8 151 43.0
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 4.0e-19 99.4 132 51.5
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 6.9e-19 98.6 152 42.1
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 2.0e-18 97.1 148 45.9
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 3.4e-18 96.3 163 42.3
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 4.5e-18 95.9 143 46.2
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 4.5e-18 95.9 138 44.9
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.5e-18 95.9 152 43.4
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 4.5e-18 95.9 149 43.6
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 5.8e-18 95.5 146 45.9
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 5.8e-18 95.5 153 41.2
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.6e-18 95.1 148 46.6
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 7.6e-18 95.1 146 45.9
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.0e-17 94.7 147 43.5
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.3e-17 94.4 153 43.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.7e-17 94.0 149 43.0
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.7e-17 94.0 152 46.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.7e-17 94.0 152 45.4
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.7e-17 94.0 153 45.1
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.7e-17 94.0 164 42.1
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.7e-17 94.0 166 41.6
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.9e-17 93.2 142 44.4
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.9e-17 93.2 153 45.1
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 3.8e-17 92.8 108 49.1
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.8e-17 92.8 153 43.8
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.8e-17 92.8 153 43.8
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.8e-17 92.8 153 43.8
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.8e-17 92.8 151 43.7
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 6.5e-17 92.0 158 41.8
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 6.5e-17 92.0 153 45.1
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 8.4e-17 91.7 144 42.4
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.1e-16 91.3 160 41.9
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 1.1e-16 91.3 154 41.6
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.4e-16 90.9 145 45.5
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.9e-16 90.5 143 42.7
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.9e-16 90.5 149 40.3
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.5e-16 90.1 163 41.1
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 2.5e-16 90.1 150 42.7
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.2e-16 89.4 125 43.2
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 9.3e-16 88.2 151 41.1
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.2e-15 87.8 76 64.5
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 1.2e-15 87.8 147 42.2
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.6e-15 87.4 154 41.6
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.6e-15 87.4 150 41.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.6e-15 87.4 165 41.8
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.1e-15 87.0 144 41.7
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 2.1e-15 87.0 128 44.5
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.7e-15 86.7 144 43.1
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.7e-15 86.7 150 42.0
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 3.5e-15 86.3 155 41.3
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.5e-15 86.3 145 44.1
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 4.6e-15 85.9 172 38.4
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.0e-15 85.5 149 40.9
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.3e-14 84.3 165 39.4
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.8e-14 84.0 152 40.1
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 2.3e-14 83.6 155 40.6
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.3e-14 83.6 88 55.7
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.0e-14 83.2 146 41.1
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.0e-14 83.2 162 38.9
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.9e-14 82.8 126 41.3
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 3.9e-14 82.8 90 52.2
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 5.1e-14 82.4 166 41.0
BcaB01g04584 Brassica carinata HOM05D004998 ORTHO05D006104 6.7e-14 82.0 65 78.5
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 8.7e-14 81.6 151 43.7
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.7e-13 79.0 153 38.6
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.6e-12 77.4 149 37.6
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 2.8e-12 76.6 156 36.5
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.8e-12 76.6 159 39.0
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.8e-12 76.6 82 51.2
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.7e-12 76.3 166 36.7
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 4.8e-12 75.9 100 49.0
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 4.8e-12 75.9 148 39.9
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.4e-11 73.6 153 39.9
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.3e-11 72.4 144 34.7
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 3.4e-10 69.7 167 38.3
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.7e-09 67.4 147 36.7
A01p36350 Brassica napus HOM05D004998 ORTHO05D006104 7.2e-08 62.0 43 81.4
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-07 61.2 94 39.4
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 3.6e-07 59.7 146 30.8
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.6e-07 59.3 73 49.3
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 6.1e-07 58.9 147 36.1
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.1e-07 58.9 147 36.1
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.9e-07 58.5 118 34.7
C01p49830 Brassica napus HOM05D004998 ORTHO05D006104 1.0e-06 58.2 42 76.2
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 5.1e-06 55.8 116 37.1


User provided reference genes

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