Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p50920 Brassica napus HOM05D027132 ORTHO05D027492 5.7e-50 200.7 106 100.0
A01p02830 Brassica napus HOM05D027132 ORTHO05D027492 1.1e-19 100.1 49 91.8
BcaNung01532 Brassica carinata HOM05D002985 ORTHO05D003335 3.7e-17 91.7 47 93.6
A03p60620 Brassica napus HOM05D002985 ORTHO05D003335 3.7e-17 91.7 47 93.6
C07p58520 Brassica napus HOM05D002985 ORTHO05D003335 3.7e-17 91.7 47 93.6
BolC7t46307H Brassica oleracea HOM05D002985 ORTHO05D003335 3.7e-17 91.7 47 93.6
BraA03t15103Z Brassica rapa HOM05D002985 ORTHO05D003335 3.7e-17 91.7 47 93.6
Aa31LG2G19060 Aethionema arabicum HOM05D002985 ORTHO05D003335 2.7e-15 85.5 47 87.2
BolC3t20526H Brassica oleracea HOM05D027132 ORTHO05D027492 2.7e-15 85.5 48 77.1
AL7G20770 Arabidopsis lyrata HOM05D002985 ORTHO05D003335 1.3e-14 83.2 47 85.1
AT4G31310 Arabidopsis thaliana HOM05D002985 ORTHO05D003335 2.3e-14 82.4 47 83.0
Sp7g29160 Schrenkiella parvula HOM05D002985 ORTHO05D003335 3.9e-14 81.6 49 85.7
Thhalv10026383m.g Eutrema salsugineum HOM05D002985 ORTHO05D003335 6.6e-14 80.9 47 85.1
Carub.0007s0925 Capsella rubella HOM05D002985 ORTHO05D003335 8.6e-14 80.5 47 80.9
CARHR239180 Cardamine hirsuta HOM05D002985 ORTHO05D003335 1.5e-13 79.7 47 80.9
C08p37820 Brassica napus HOM05D002985 ORTHO05D003335 4.3e-13 78.2 40 97.5
THA.LOC104803885 Tarenaya hassleriana HOM05D002985 ORTHO05D003335 4.3e-13 78.2 46 80.4
BcaC01g00778 Brassica carinata HOM05D027132 ORTHO05D027492 8.1e-12 73.9 48 68.8
Thhalv10000361m.g Eutrema salsugineum HOM05D002985 ORTHO05D003335 7.6e-10 67.4 46 65.2
Cc06_g20070 Coffea canephora HOM05D002985 ORTHO05D003335 2.9e-09 65.5 46 67.4
FAN20G1725 Fragaria x ananassa HOM05D002985 ORTHO05D003335 3.8e-09 65.1 46 69.6
Sp4g03410 Schrenkiella parvula HOM05D002985 ORTHO05D003335 3.8e-09 65.1 46 65.2
GSVIVG01035566001 Vitis vinifera HOM05D002985 ORTHO05D003335 3.8e-09 65.1 47 66.0
THA.LOC104803587 Tarenaya hassleriana HOM05D002985 ORTHO05D003335 6.4e-09 64.3 46 65.2
CANSAT25G1371 Cannabis sativa HOM05D002985 ORTHO05D003335 8.4e-09 63.9 46 67.4
Cpa.g.sc148.2 Carica papaya HOM05D002985 ORTHO05D003335 8.4e-09 63.9 46 67.4
FvH4_2g36470 Fragaria vesca HOM05D002985 ORTHO05D003335 1.1e-08 63.5 46 67.4
MSTRG.13935 Avicennia marina HOM05D002985 ORTHO05D003335 1.4e-08 63.2 46 63.0
CARHR117670 Cardamine hirsuta HOM05D002985 ORTHO05D003335 1.4e-08 63.2 46 65.2
arahy.Tifrunner.gnm1.ann1.UVU7SC Arachis hypogaea HOM05D002985 ORTHO05D003335 1.9e-08 62.8 46 69.6
arahy.Tifrunner.gnm1.ann1.X54F5Q Arachis hypogaea HOM05D002985 ORTHO05D003335 1.9e-08 62.8 46 69.6
BcaC02g08465 Brassica carinata HOM05D002985 ORTHO05D003335 1.9e-08 62.8 46 63.0
MD15G1103200 Malus domestica HOM05D002985 ORTHO05D003335 1.9e-08 62.8 46 67.4
RcHm_v2.0_Chr6g0305411 Rosa chinensis HOM05D002985 ORTHO05D003335 1.9e-08 62.8 46 67.4
BcaC02g08466 Brassica carinata HOM05D002985 ORTHO05D003335 2.4e-08 62.4 46 60.9
C04p53990 Brassica napus HOM05D002985 ORTHO05D003335 2.4e-08 62.4 46 60.9
BolC4t26951H Brassica oleracea HOM05D002985 ORTHO05D003335 2.4e-08 62.4 46 60.9
QL12p025851 Quercus lobata HOM05D002985 ORTHO05D003335 2.4e-08 62.4 46 65.2
DCAR_000672 Daucus carota HOM05D002985 ORTHO05D003335 3.2e-08 62.0 47 63.8
A04p18700 Brassica napus HOM05D002985 ORTHO05D003335 4.1e-08 61.6 46 60.9
BraA04t17480Z Brassica rapa HOM05D002985 ORTHO05D003335 4.1e-08 61.6 46 60.9
TWI36G0183 Tripterygium wilfordii HOM05D002985 ORTHO05D003335 4.1e-08 61.6 46 60.9
Migut.A00454 Erythranthe guttata HOM05D002985 ORTHO05D003335 5.4e-08 61.2 46 63.0
THA.LOC104823908 Tarenaya hassleriana HOM05D002985 ORTHO05D003335 5.4e-08 61.2 46 63.0
CiPaw.07G209800 Carya illinoinensis HOM05D002985 ORTHO05D003335 7.1e-08 60.8 46 60.9
Oeu002015.1 Olea europaea HOM05D002985 ORTHO05D003335 7.1e-08 60.8 46 63.0
Aa31sc132G80 Aethionema arabicum HOM05D002985 ORTHO05D003335 9.2e-08 60.5 46 63.0
AL4G14780 Arabidopsis lyrata HOM05D002985 ORTHO05D003335 9.2e-08 60.5 47 63.8
Gorai.009G068600 Gossypium raimondii HOM05D002985 ORTHO05D003335 9.2e-08 60.5 47 61.7
Hma1.2p1_0331F.1_g127500 Hydrangea macrophylla HOM05D002985 ORTHO05D003335 9.2e-08 60.5 46 65.2
Carub.0004s0371 Capsella rubella HOM05D002985 ORTHO05D003335 1.2e-07 60.1 46 60.9
Gohir.A05G066100 Gossypium hirsutum HOM05D002985 ORTHO05D003335 1.2e-07 60.1 46 63.0
Gohir.D05G068500 Gossypium hirsutum HOM05D002985 ORTHO05D003335 1.2e-07 60.1 46 63.0
Gorai.009G069500 Gossypium raimondii HOM05D002985 ORTHO05D003335 1.2e-07 60.1 46 63.0
A09p48360 Brassica napus HOM05D018401 ORTHO05D022046 1.6e-07 59.7 33 81.8
BraA09t40288Z Brassica rapa HOM05D018401 ORTHO05D022046 1.6e-07 59.7 33 81.8
A03p43670 Brassica napus HOM05D018401 ORTHO05D022046 2.1e-07 59.3 30 90.0
MBI13_g34298_MAGBIO Magnolia biondii HOM05D002985 ORTHO05D003335 2.1e-07 59.3 46 63.0
ATR0626G165 Amborella trichopoda HOM05D002985 ORTHO05D003335 2.7e-07 58.9 46 63.0
Os06g0702700 Oryza sativa ssp. japonica HOM05D002985 ORTHO05D003335 2.7e-07 58.9 46 58.7
Glyma.04G077500 Glycine max HOM05D002985 ORTHO05D003335 3.5e-07 58.5 46 65.2
Glyma.06G078600 Glycine max HOM05D002985 ORTHO05D003335 3.5e-07 58.5 46 65.2
MD08G1124500 Malus domestica HOM05D002985 ORTHO05D003335 3.5e-07 58.5 46 63.0
RhsimUnG0033300 Rhododendron simsii HOM05D002985 ORTHO05D003335 3.5e-07 58.5 44 61.4
THA.LOC104823137 Tarenaya hassleriana HOM05D002985 ORTHO05D003335 3.5e-07 58.5 46 65.2
Zm00001eb227130 Zea mays HOM05D002985 ORTHO05D003335 3.5e-07 58.5 46 56.5
Haze_21801 Corylus avellana HOM05D002985 ORTHO05D003335 4.6e-07 58.2 46 60.9
Thhalv10005031m.g Eutrema salsugineum HOM05D002985 ORTHO05D003335 4.6e-07 58.2 46 60.9
Lalb_Chr23g0269271 Lupinus albus HOM05D002985 ORTHO05D003335 4.6e-07 58.2 46 60.9
PGR044G1430 Punica granatum HOM05D002985 ORTHO05D003335 4.6e-07 58.2 46 58.7
Ciclev10009652m.g Citrus clementina HOM05D002985 ORTHO05D003335 6.0e-07 57.8 46 60.9
Dinv37494 Davidia involucrata HOM05D002985 ORTHO05D003335 6.0e-07 57.8 46 63.0
Lj1g0000796 Lotus japonicus HOM05D002985 ORTHO05D003335 7.8e-07 57.4 46 63.0
PSO170G0284 Papaver somniferum HOM05D002985 ORTHO05D003335 7.8e-07 57.4 46 60.9
Potri.018G003000 Populus trichocarpa HOM05D002985 ORTHO05D003335 7.8e-07 57.4 46 60.9
Sabra18G0006400 Salix brachista HOM05D002985 ORTHO05D003335 7.8e-07 57.4 46 60.9
Sabra18G0006700 Salix brachista HOM05D002985 ORTHO05D003335 7.8e-07 57.4 46 60.9
Thecc.09G002700 Theobroma cacao HOM05D002985 ORTHO05D003335 7.8e-07 57.4 46 60.9
Duzib150G0693 Durio zibethinus HOM05D002985 ORTHO05D003335 1.0e-06 57.0 46 58.7
AL5G18770 Arabidopsis lyrata HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 58.7
AT3G28940 Arabidopsis thaliana HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 60.9
Manes.03G001200 Manihot esculenta HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 60.9
SalBow8G0292 Salvia bowleyana HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 54.3
Solyc08g069232.1 Solanum lycopersicum HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 56.5
Sopen08g022870 Solanum pennellii HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 56.5
PGSC0003DMG400029585 Solanum tuberosum HOM05D002985 ORTHO05D003335 1.3e-06 56.6 46 56.5
Ah.11g044060 Amaranthus hybridus HOM05D002985 ORTHO05D003335 1.7e-06 56.2 46 60.9
EL10As2g23243 Beta vulgaris HOM05D002985 ORTHO05D003335 1.7e-06 56.2 46 58.7
CSS0035055 Camellia sinensis var. sinensis HOM05D002985 ORTHO05D003335 1.7e-06 56.2 46 63.0
COL.COLO4_18627 Corchorus olitorius HOM05D002985 ORTHO05D003335 1.7e-06 56.2 44 63.6
Gohir.A05G065200 Gossypium hirsutum HOM05D002985 ORTHO05D003335 1.7e-06 56.2 46 60.9
Nn8g41106 Nelumbo nucifera HOM05D002985 ORTHO05D003335 1.7e-06 56.2 52 55.8
Potri.006G278900 Populus trichocarpa HOM05D002985 ORTHO05D003335 1.7e-06 56.2 46 58.7
vmacro00588 Vaccinium macrocarpon HOM05D002985 ORTHO05D003335 1.7e-06 56.2 44 59.1
Atru.chr7.2667 Acer truncatum HOM05D002985 ORTHO05D003335 2.3e-06 55.8 46 58.7
Prupe.1G456100 Prunus persica HOM05D002985 ORTHO05D003335 2.3e-06 55.8 46 58.7
HPP92_010798 Vanilla planifolia HOM05D001776 ORTHO05D001771 2.3e-06 55.8 47 57.4
Actinidia03337 Actinidia chinensis HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 58.7
BcaB07g30106 Brassica carinata HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 54.3
BcaB07g30107 Brassica carinata HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 54.3
BcaC06g33657 Brassica carinata HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 58.7
A02p36190 Brassica napus HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 58.7
ClCG05G026330 Citrullus lanatus HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 60.9
SGA_v2.0_scaffold54G19474 Striga asiatica HOM05D002985 ORTHO05D003335 3.0e-06 55.5 46 58.7
Os02g0141000 Oryza sativa ssp. japonica HOM05D002985 ORTHO05D003335 3.9e-06 55.1 46 56.5
Sabra18G0003000 Salix brachista HOM05D002985 ORTHO05D003335 3.9e-06 55.1 44 61.4
Hund03263 Selenicereus undatus HOM05D002985 ORTHO05D003335 3.9e-06 55.1 46 60.9
AT2G24390 Arabidopsis thaliana HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 60.9
CARHR152000 Cardamine hirsuta HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 56.5
Cfa013313 Carpinus fangiana HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 58.7
ClCG08G012510 Citrullus lanatus HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 60.9
ECA240G2981 Erigeron canadensis HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 54.3
Lsat_1_v5_gn_5_56481 Lactuca sativa HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 54.3
Nitab4.5_0000970g0120 Nicotiana tabacum HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 54.3
Sed0000194 Sechium edule HOM05D002985 ORTHO05D003335 5.1e-06 54.7 46 60.9
BcaC03g17541 Brassica carinata HOM05D000425 ORTHO05D000373 6.6e-06 54.3 46 56.5
C02p55170 Brassica napus HOM05D002985 ORTHO05D003335 6.6e-06 54.3 46 56.5
BolC2t11567H Brassica oleracea HOM05D002985 ORTHO05D003335 6.6e-06 54.3 46 56.5
CAN.G480.18 Capsicum annuum HOM05D002985 ORTHO05D003335 6.6e-06 54.3 46 54.3
MELO3C011170.2 Cucumis melo HOM05D002985 ORTHO05D003335 6.6e-06 54.3 46 58.7
Eucgr.C03983 Eucalyptus grandis HOM05D002985 ORTHO05D003335 6.6e-06 54.3 46 56.5
Nitab4.5_0001942g0150 Nicotiana tabacum HOM05D002985 ORTHO05D003335 6.6e-06 54.3 46 54.3
Aa31LG2G4260 Aethionema arabicum HOM05D002985 ORTHO05D003335 8.6e-06 53.9 46 50.0
EL10Ac2g03693 Beta vulgaris HOM05D002985 ORTHO05D003335 8.6e-06 53.9 46 58.7
A06p40230 Brassica napus HOM05D002985 ORTHO05D003335 8.6e-06 53.9 46 56.5
C07p37870 Brassica napus HOM05D002985 ORTHO05D003335 8.6e-06 53.9 46 56.5
BolC7t44309H Brassica oleracea HOM05D002985 ORTHO05D003335 8.6e-06 53.9 46 56.5
BraA06t26938Z Brassica rapa HOM05D002985 ORTHO05D003335 8.6e-06 53.9 46 56.5


User provided reference genes

Program Settings