Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.5e-127 458.8 227 100.0
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.1e-125 451.8 232 97.4
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 7.5e-124 447.2 228 96.9
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 9.8e-124 446.8 228 96.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.6e-116 422.2 227 90.7
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.4e-114 414.5 227 88.5
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 9.2e-114 413.7 222 89.6
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.5e-111 406.4 228 88.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.3e-111 405.2 227 87.7
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.3e-109 399.1 228 86.8
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 8.9e-109 397.1 195 100.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-108 396.0 228 86.8
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.7e-104 382.9 225 84.0
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.2e-102 376.7 228 84.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.2e-102 376.7 228 84.2
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.1e-102 375.9 226 83.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-98 363.6 227 80.6
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.1e-94 349.4 254 70.5
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.4e-90 336.7 227 74.9
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.1e-85 318.9 227 71.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.3e-85 318.2 227 74.9
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 5.6e-79 298.1 221 65.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.1e-77 293.9 221 67.0
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 6.9e-77 291.2 222 64.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.0e-76 289.7 225 61.3
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.4e-76 288.9 225 64.9
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 4.5e-76 288.5 224 62.9
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.6e-76 287.7 225 62.2
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-75 287.3 218 64.2
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.3e-75 287.0 236 60.2
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.3e-75 287.0 216 66.2
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.3e-75 287.0 223 63.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.7e-75 286.6 224 62.9
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.7e-75 286.6 225 64.0
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-75 285.8 224 63.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.8e-75 285.4 224 63.8
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.9e-75 285.0 225 64.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 6.5e-75 284.6 222 63.5
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 6.5e-75 284.6 233 58.8
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 8.4e-75 284.3 227 61.7
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 8.4e-75 284.3 236 58.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.9e-74 283.1 225 60.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.9e-74 283.1 224 62.1
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.5e-74 282.7 226 61.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.2e-74 282.3 233 59.7
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.2e-74 282.0 224 62.5
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 5.5e-74 281.6 224 61.6
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 7.1e-74 281.2 256 57.4
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 9.3e-74 280.8 224 62.1
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 9.3e-74 280.8 222 61.7
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.1e-73 279.6 224 62.1
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.7e-73 279.3 228 61.4
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.5e-73 278.9 224 62.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 4.6e-73 278.5 225 62.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 4.6e-73 278.5 226 59.7
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 6.0e-73 278.1 226 63.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 6.0e-73 278.1 223 63.7
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 7.9e-73 277.7 217 63.6
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 7.9e-73 277.7 225 59.6
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-72 276.9 226 60.2
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 5.1e-72 275.0 223 63.2
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 8.7e-72 274.2 222 59.5
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 8.7e-72 274.2 223 62.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-71 273.9 231 60.6
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 228 60.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.3e-71 272.3 228 60.5
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 4.3e-71 271.9 224 60.7
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 4.3e-71 271.9 224 61.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 5.7e-71 271.6 225 59.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 7.4e-71 271.2 219 59.4
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 9.6e-71 270.8 230 59.6
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-70 270.4 220 60.9
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.1e-70 269.6 224 59.4
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 3.7e-70 268.9 235 58.7
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-70 268.9 221 60.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.7e-70 268.9 227 62.6
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.7e-70 268.9 223 62.3
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.7e-70 268.9 224 62.1
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 4.8e-70 268.5 224 59.4
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.1e-69 267.3 224 57.6
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.1e-69 267.3 221 59.7
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.4e-69 266.9 171 72.5
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-69 265.4 222 59.5
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 6.9e-69 264.6 225 59.1
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 9.0e-69 264.2 244 57.4
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.2e-68 263.8 237 58.6
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-68 263.5 226 58.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.4e-68 262.3 223 58.7
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.4e-68 262.3 221 57.5
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 5.8e-68 261.5 226 58.0
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 5.8e-68 261.5 225 59.6
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 7.6e-68 261.2 223 59.6
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.3e-67 260.4 226 57.5
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.9e-67 259.2 219 59.4
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 5.0e-67 258.5 246 54.9
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 6.5e-67 258.1 224 59.4
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.1e-66 257.3 230 55.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.4e-66 256.9 224 58.0
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.9e-66 256.5 224 58.0
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.2e-66 255.8 224 56.7
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 7.1e-66 254.6 227 55.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 9.3e-66 254.2 246 54.9
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 9.3e-66 254.2 224 55.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.6e-65 253.4 224 55.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 6.1e-65 251.5 159 73.0
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.8e-64 250.0 225 56.9
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 8.7e-64 247.7 222 58.6
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.5e-63 246.9 233 57.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 3.3e-63 245.7 222 56.3
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 9.7e-63 244.2 223 52.9
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.7e-63 244.2 223 52.9
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.7e-63 244.2 223 52.9
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 9.7e-63 244.2 227 56.8
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.3e-62 243.8 223 52.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 6.3e-62 241.5 209 61.2
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 8.2e-62 241.1 221 57.9
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.8e-61 240.0 237 54.0
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.4e-61 239.6 222 55.0
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.1e-61 239.2 161 69.6
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.1e-61 239.2 267 48.3
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 9.0e-61 237.7 254 48.0
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-60 236.9 223 51.6
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.5e-60 236.9 273 48.7
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.0e-59 234.2 225 53.8
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.3e-59 233.8 218 54.6
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.3e-59 233.8 239 55.6
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 5.0e-59 231.9 221 55.2
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 8.5e-59 231.1 225 55.1
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.0e-56 224.2 197 55.8
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.4e-56 223.8 244 50.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.4e-56 223.8 225 52.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 5.1e-56 221.9 133 82.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 4.1e-53 212.2 138 71.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 9.1e-53 211.1 141 65.2
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-52 210.7 270 44.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 6.1e-49 198.4 130 70.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.0e-48 196.1 238 49.6
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.0e-47 193.4 140 66.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.7e-47 191.8 178 54.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.1e-45 187.6 130 69.2
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.2e-44 184.1 135 62.2
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.0e-44 183.3 160 55.6
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.5e-44 182.2 134 62.7
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.5e-43 178.3 130 63.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-39 167.5 122 65.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.1e-37 159.5 134 55.2
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.0e-31 140.2 90 67.8
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-31 139.8 229 38.9
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 5.7e-31 138.7 129 57.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.1e-29 132.9 91 65.9
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.7e-22 109.4 71 71.8
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-21 107.5 115 48.7
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 3.1e-21 106.3 123 40.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 4.1e-21 105.9 79 68.4
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 5.0e-19 99.0 230 28.3
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.0e-19 99.0 100 53.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.8e-16 90.5 74 64.9
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.3e-16 90.1 102 42.2
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.8e-16 88.6 169 33.1
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 7.5e-15 85.1 117 36.8
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.7e-14 84.0 124 33.9
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 3.7e-14 82.8 95 48.4
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.0e-13 78.6 93 45.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 9.2e-13 78.2 73 56.2
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.2e-12 77.8 85 48.2
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.0e-11 73.2 96 41.7
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 3.9e-11 72.8 56 66.1
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 5.2e-08 62.4 48 66.7


User provided reference genes

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