Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 7.9e-64 246.9 121 100.0
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 1.2e-48 196.4 95 97.9
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 8.0e-48 193.7 95 96.8
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 3.0e-47 191.8 95 94.7
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 8.8e-47 190.3 95 95.8
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 5.7e-46 187.6 98 90.8
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 2.8e-45 185.3 98 92.9
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 2.8e-45 185.3 98 92.9
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 2.8e-45 185.3 98 92.9
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 8.3e-45 183.7 98 91.8
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 2.4e-44 182.2 98 91.8
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 6.8e-39 164.1 97 82.5
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 3.4e-38 161.8 107 70.1
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 5.7e-38 161.0 90 88.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 7.5e-38 160.6 98 75.5
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 9.8e-38 160.2 97 77.3
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 1.3e-37 159.8 97 77.3
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 2.2e-37 159.1 97 77.3
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 2.9e-34 148.7 96 70.8
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 1.1e-33 146.7 98 73.5
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.8e-28 129.4 111 59.5
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 9.2e-28 127.1 111 57.7
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.2e-27 126.7 112 56.2
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.6e-27 126.3 110 58.2
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 2.0e-27 125.9 102 57.8
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 2.0e-27 125.9 99 58.6
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 4.6e-27 124.8 111 56.8
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 7.8e-27 124.0 102 56.9
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 7.8e-27 124.0 109 56.0
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 5.0e-26 121.3 96 58.3
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 5.0e-26 121.3 96 58.3
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 6.6e-26 120.9 99 56.6
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 6.6e-26 120.9 111 55.9
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.5e-25 119.0 112 52.7
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 2.5e-25 119.0 97 57.7
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 3.3e-25 118.6 96 58.3
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 3.3e-25 118.6 97 58.8
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 4.3e-25 118.2 112 52.7
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 5.6e-25 117.9 97 55.7
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 5.6e-25 117.9 97 56.7
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 7.3e-25 117.5 99 55.6
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 7.3e-25 117.5 112 52.7
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 9.5e-25 117.1 97 55.7
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 9.5e-25 117.1 95 56.8
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 1.2e-24 116.7 97 58.8
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 2.1e-24 115.9 99 54.5
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 2.1e-24 115.9 108 53.7
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.6e-24 115.2 106 52.8
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.2e-24 114.4 108 52.8
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.2e-24 114.4 108 52.8
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 6.2e-24 114.4 97 54.6
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 8.0e-24 114.0 91 53.8
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 1.4e-23 113.2 109 50.5
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 1.8e-23 112.8 99 52.5
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.8e-23 112.8 96 55.2
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 1.8e-23 112.8 96 57.3
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 2.3e-23 112.5 109 53.2
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.3e-23 112.5 106 50.0
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.1e-23 112.1 97 55.7
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.1e-23 112.1 97 55.7
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 4.0e-23 111.7 96 58.3
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 5.2e-23 111.3 96 58.3
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 6.8e-23 110.9 104 53.8
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 6.8e-23 110.9 96 54.2
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 6.8e-23 110.9 98 55.1
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 6.8e-23 110.9 105 52.4
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 8.9e-23 110.5 99 54.5
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 8.9e-23 110.5 106 53.8
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 1.2e-22 110.2 98 55.1
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.2e-22 110.2 99 53.5
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.2e-22 110.2 99 53.5
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 1.5e-22 109.8 99 54.5
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.5e-22 109.8 108 50.9
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 2.0e-22 109.4 96 57.3
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 2.0e-22 109.4 84 64.3
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.6e-22 109.0 96 53.1
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 3.4e-22 108.6 99 55.6
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 4.4e-22 108.2 89 59.6
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.8e-22 107.8 91 56.0
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.8e-22 107.1 96 53.1
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 1.3e-21 106.7 96 54.2
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 2.2e-21 105.9 96 55.2
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.2e-21 105.9 96 55.2
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 3.7e-21 105.1 97 49.5
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 3.7e-21 105.1 99 52.5
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 3.7e-21 105.1 99 51.5
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 4.9e-21 104.8 91 54.9
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 4.9e-21 104.8 88 55.7
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 6.4e-21 104.4 88 55.7
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 6.4e-21 104.4 88 55.7
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 8.3e-21 104.0 88 58.0
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.1e-20 103.6 93 54.8
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.4e-20 103.2 88 56.8
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 1.4e-20 103.2 88 56.8
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.9e-20 102.8 88 55.7
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.9e-20 102.8 97 52.6
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 2.4e-20 102.4 81 59.3
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 4.1e-20 101.7 91 57.1
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 9.2e-20 100.5 97 49.5
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 9.2e-20 100.5 96 52.1
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 9.2e-20 100.5 96 53.1
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 9.2e-20 100.5 97 52.6
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 1.6e-19 99.8 104 51.9
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.7e-19 99.0 88 58.0
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.7e-19 99.0 97 52.6
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 2.7e-19 99.0 96 49.0
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 2.7e-19 99.0 96 49.0
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 2.7e-19 99.0 110 46.4
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.5e-19 98.6 91 52.7
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 4.6e-19 98.2 96 52.1
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 6.0e-19 97.8 97 52.6
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 6.0e-19 97.8 108 47.2
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 6.0e-19 97.8 93 53.8
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 6.0e-19 97.8 97 53.6
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 7.8e-19 97.4 98 49.0
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.0e-18 97.1 98 50.0
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.0e-18 97.1 97 48.5
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.0e-18 97.1 97 50.5
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.3e-18 96.7 110 45.5
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.3e-18 95.9 96 49.0
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 3.9e-18 95.1 93 58.1
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.9e-18 95.1 97 47.4
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.9e-18 95.1 108 46.3
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 3.9e-18 95.1 96 49.0
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.5e-17 93.2 96 47.9
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.5e-17 93.2 102 45.1
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.9e-17 92.8 97 47.4
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 1.9e-17 92.8 97 47.4
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.5e-17 92.4 106 49.1
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 4.3e-17 91.7 96 46.9
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 4.3e-17 91.7 96 46.9
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 7.3e-17 90.9 88 54.5
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 2.8e-16 89.0 102 44.1
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.8e-16 89.0 102 44.1
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.8e-16 89.0 102 44.1
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.6e-16 88.6 94 46.8
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 8.1e-16 87.4 96 45.8
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.8e-15 86.3 97 47.4
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.8e-15 86.3 97 47.4
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.3e-15 85.9 97 49.5
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.3e-15 85.9 94 50.0
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.1e-15 85.5 97 47.4
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 4.0e-15 85.1 103 45.6
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 6.8e-15 84.3 95 47.4
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 1.2e-14 83.6 65 58.5
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.5e-14 83.2 95 47.4
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.4e-14 82.0 95 46.3
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.7e-13 78.6 94 46.8
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 8.3e-13 77.4 105 44.8
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.9e-12 76.3 94 43.6
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 5.4e-12 74.7 98 40.8
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 6.0e-11 71.2 69 56.5
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.3e-10 70.1 95 42.1
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.3e-10 70.1 95 42.1
BcaC03g17819 Brassica carinata HOM05D003561 ORTHO05D004351 1.3e-10 70.1 33 93.9
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 6.6e-10 67.8 54 59.3
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 1.5e-09 66.6 83 47.0
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.2e-08 63.5 49 57.1


User provided reference genes

Program Settings