Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1961.4 1000 100.0
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1918.7 1000 97.8
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1918.7 1000 97.8
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1917.5 1000 97.9
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1908.6 1000 97.2
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1842.8 1003 93.5
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1752.3 1003 89.5
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1743.4 1004 87.5
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1737.2 1004 88.0
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1729.5 1004 87.3
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1701.0 1004 86.4
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1620.9 1013 82.4
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1506.9 1008 76.3
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1316.6 1015 65.8
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1314.7 1012 65.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1314.7 1014 65.9
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1310.0 1013 65.2
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1309.7 1014 66.2
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1298.1 1016 65.5
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1286.9 1007 65.3
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1285.4 1014 64.3
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1284.6 1015 64.6
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1282.7 1015 65.0
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1278.1 1015 64.1
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 1015 64.3
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 1021 64.3
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 986 65.2
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1270.0 1018 63.8
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1266.5 997 64.7
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1258.8 1017 63.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1258.4 1080 60.7
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1257.3 1016 64.1
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1256.9 997 64.3
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1255.0 1014 63.3
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1247.6 991 64.1
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 0.0e+00 1246.9 693 90.3
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1234.2 1015 61.7
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1231.9 1002 62.8
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1231.5 1016 62.3
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1231.1 1012 61.5
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1229.5 1016 62.1
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1224.5 1012 62.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1222.6 1017 62.0
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1221.5 1016 61.4
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1219.1 1016 61.2
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1218.4 1017 61.1
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1212.2 1077 59.6
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1186.8 1060 59.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1183.3 1016 60.5
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1182.2 1016 60.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1179.9 1016 60.2
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1179.9 1019 59.6
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1178.3 1010 59.7
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1177.9 1021 60.3
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1176.0 1007 60.5
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1174.5 1021 60.6
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1173.3 1012 59.8
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1169.5 1017 60.1
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1169.1 990 60.4
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1164.4 1031 59.8
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1161.4 1012 60.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1160.2 1018 59.3
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1158.7 1017 58.7
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1151.3 1023 59.3
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1150.2 1017 58.5
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1149.0 1013 58.0
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1145.6 1018 58.8
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1142.5 1018 57.6
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1140.9 1006 58.8
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1139.0 1014 58.3
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1137.9 1004 58.9
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1129.8 1012 57.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1129.4 1012 57.9
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1129.0 1011 57.8
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1118.2 1011 57.5
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1118.2 1010 57.9
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1114.8 1011 57.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1112.1 778 70.8
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1089.7 1013 56.5
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1088.2 1011 56.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1077.4 1008 56.1
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 9.1e-307 1057.0 778 68.6
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 8.5e-305 1050.4 991 56.2
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 8.8e-302 1040.4 1018 54.8
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 5.0e-297 1024.6 796 64.9
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.2e-287 993.4 1019 53.2
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.2e-277 960.3 1019 51.7
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 4.5e-253 878.6 599 71.6
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 3.9e-249 865.5 612 69.4
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 9.6e-248 860.9 975 49.0
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 6.9e-238 828.2 1018 45.6
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-235 818.9 1020 45.2
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.1e-230 804.3 986 46.0
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.5e-216 757.3 757 52.4
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 5.9e-213 745.3 877 47.4
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.0e-208 730.3 774 49.1
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.2e-205 721.1 1011 43.5
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 7.0e-190 668.7 503 65.2
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 7.7e-189 665.2 544 62.5
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 4.4e-184 649.4 453 72.2
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 7.0e-182 642.1 433 75.1
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.2e-173 614.8 552 58.5
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.0e-172 611.7 1025 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.4e-169 601.3 1045 37.2
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.1e-162 577.4 572 54.5
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.1e-161 573.5 528 58.0
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 3.5e-149 533.5 419 64.4
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 5.4e-142 509.6 1028 33.1
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.3e-138 498.4 507 51.5
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.6e-128 464.2 508 49.6
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 7.9e-125 452.6 461 51.0
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 4.2e-118 430.3 627 40.5
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 3.1e-113 414.1 1065 29.6
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.6e-109 400.6 237 82.7
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.8e-105 388.3 302 68.5
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.3e-103 382.1 427 48.9
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.3e-98 365.5 297 60.3
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.2e-98 362.8 237 77.2
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 8.2e-98 362.8 527 41.0
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.5e-70 272.3 453 38.4
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.0e-59 235.3 391 40.9
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 8.3e-58 229.9 331 40.5
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 7.0e-57 226.9 362 39.0
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.0e-56 225.3 313 41.2
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.7e-56 224.9 311 41.5
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 4.6e-56 224.2 149 79.9
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 4.6e-56 224.2 149 79.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.7e-55 222.2 362 38.4
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 7.3e-46 190.3 110 82.7
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 5.2e-44 184.1 768 26.4
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 8.9e-44 183.3 168 64.3
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.9e-42 178.3 228 45.6
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-41 176.0 513 30.0
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.3e-39 169.5 803 25.7
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-39 168.3 509 29.1
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 4.3e-38 164.5 122 75.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 1.2e-35 156.4 122 74.6
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 2.1e-32 145.6 754 24.0
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 2.3e-31 142.1 166 49.4
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-31 141.7 312 33.3
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-31 141.0 346 33.5
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.1e-30 139.8 76 92.1
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 2.8e-29 135.2 94 79.8
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 4.3e-22 111.3 84 64.3
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 5.6e-22 110.9 139 42.4
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 3.4e-19 101.7 89 55.1
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 2.2e-18 99.0 54 90.7
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 3.8e-18 98.2 154 36.4
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 7.9e-16 90.5 149 42.3
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-13 83.2 51 74.5
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 6.2e-13 80.9 75 57.3
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-12 79.7 426 22.8
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 6.9e-12 77.4 65 58.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 9.0e-12 77.0 46 80.4


User provided reference genes

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