Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 9.4e-40 166.4 83 100.0
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 7.2e-16 87.0 59 76.3
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 2.7e-15 85.1 90 55.6
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 6.1e-15 84.0 90 54.4
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 1.0e-14 83.2 70 67.1
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.0e-14 83.2 90 54.4
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.4e-14 82.8 90 54.4
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.4e-14 82.8 72 66.7
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.4e-14 82.8 72 66.7
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.4e-14 82.8 72 66.7
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.4e-14 82.8 72 66.7
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 1.4e-14 82.8 72 66.7
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.4e-14 82.8 90 53.3
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.8e-14 82.4 90 54.4
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 2.3e-14 82.0 90 53.3
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 2.3e-14 82.0 90 53.3
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 2.3e-14 82.0 90 53.3
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 3.0e-14 81.6 90 53.3
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 4.0e-14 81.3 72 65.3
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 52.2
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 4.0e-14 81.3 90 53.3
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 52.2
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 52.2
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 52.2
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 52.2
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 52.2
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 4.0e-14 81.3 90 53.3
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 53.3
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 53.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 53.3
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 52.2
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 53.3
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 52.2
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.2e-14 80.9 91 53.8
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 5.2e-14 80.9 90 53.3
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.8e-14 80.5 90 52.2
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 6.8e-14 80.5 90 52.2
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 6.8e-14 80.5 70 64.3
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 8.8e-14 80.1 90 52.2
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 8.8e-14 80.1 90 52.2
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 8.8e-14 80.1 70 64.3
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 8.8e-14 80.1 90 52.2
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.2e-13 79.7 99 49.5
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 1.2e-13 79.7 90 52.2
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 1.5e-13 79.3 90 52.2
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 1.5e-13 79.3 99 50.5
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.5e-13 79.3 90 51.1
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-13 79.0 90 52.2
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-13 79.0 90 52.2
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.6e-13 78.6 90 51.1
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.6e-13 78.6 90 51.1
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.6e-13 78.6 90 51.1
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.6e-13 78.6 92 53.3
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 2.6e-13 78.6 91 53.8
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 9.8e-13 76.6 90 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 2.2e-12 75.5 90 48.9
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 2.2e-12 75.5 94 48.9
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 3.7e-12 74.7 87 51.7
BolC9t57848H Brassica oleracea HOM05D054973 ORTHO05D033743 6.3e-12 73.9 46 84.8
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.8e-11 72.4 90 47.8
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 5.4e-11 70.9 84 51.2
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 5.4e-11 70.9 90 47.8
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 1.2e-10 69.7 118 40.7
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.6e-10 69.3 83 50.6
BraA10t43615Z Brassica rapa HOM05D054973 ORTHO05D033743 1.3e-09 66.2 47 78.7
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 1.3e-09 66.2 90 42.2
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 7.2e-08 60.5 34 82.4
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.1e-07 57.4 34 76.5
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 1.8e-06 55.8 75 48.0
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 3.0e-06 55.1 82 41.5


User provided reference genes

Program Settings