Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 2.9e-19 97.4 45 100.0
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.3e-16 88.6 51 84.3
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.8e-16 88.2 51 84.3
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 3.9e-16 87.0 51 82.4
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 3.9e-16 87.0 51 82.4
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 3.9e-16 87.0 51 82.4
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.5e-15 85.1 51 80.4
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.5e-15 85.1 51 80.4
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 5.7e-15 83.2 51 80.4
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 5.7e-15 83.2 51 76.5
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 9.6e-15 82.4 51 78.4
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 2.1e-14 81.3 53 73.6
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.5e-12 75.1 50 76.0
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 1.3e-11 72.0 51 70.6
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 3.8e-11 70.5 52 63.5
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 4.2e-10 67.0 50 68.0
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.6e-09 65.1 43 69.8
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.6e-09 65.1 43 69.8
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.6e-09 65.1 43 69.8
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.6e-09 65.1 43 69.8
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.6e-09 65.1 42 69.0
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.7e-09 64.3 48 62.5
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 2.7e-09 64.3 48 62.5
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 3.5e-09 63.9 43 67.4
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 3.5e-09 63.9 43 67.4
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 4.6e-09 63.5 45 66.7
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 4.6e-09 63.5 44 65.9
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 4.6e-09 63.5 43 67.4
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 6.1e-09 63.2 43 65.1
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 6.1e-09 63.2 43 67.4
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 7.9e-09 62.8 43 65.1
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 7.9e-09 62.8 43 65.1
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 7.9e-09 62.8 43 65.1
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 7.9e-09 62.8 44 65.9
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.0e-08 62.4 43 65.1
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.3e-08 62.0 41 68.3
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.3e-08 62.0 43 65.1
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.3e-08 62.0 45 64.4
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.3e-08 62.0 47 61.7
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.3e-08 62.0 45 64.4
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.3e-08 62.0 44 61.4
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.8e-08 61.6 44 65.9
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.8e-08 61.6 43 62.8
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 1.8e-08 61.6 46 60.9
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 2.3e-08 61.2 44 63.6
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 2.3e-08 61.2 44 63.6
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.3e-08 61.2 43 67.4
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.9e-08 60.5 44 63.6
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 3.9e-08 60.5 44 63.6
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 3.9e-08 60.5 44 61.4
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.9e-08 60.5 43 65.1
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.9e-08 60.5 43 65.1
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 3.9e-08 60.5 43 65.1
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 3.9e-08 60.5 44 61.4
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 3.9e-08 60.5 43 62.8
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 3.9e-08 60.5 43 62.8
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 3.9e-08 60.5 43 62.8
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 5.1e-08 60.1 44 61.4
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 5.1e-08 60.1 43 67.4
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 6.7e-08 59.7 43 62.8
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 6.7e-08 59.7 42 64.3
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 6.7e-08 59.7 41 68.3
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 8.7e-08 59.3 47 63.8
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 8.7e-08 59.3 44 61.4
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 8.7e-08 59.3 45 64.4
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 8.7e-08 59.3 43 58.1
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 8.7e-08 59.3 45 64.4
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 8.7e-08 59.3 47 57.4
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 1.1e-07 58.9 44 63.6
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.5e-07 58.5 44 61.4
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 1.9e-07 58.2 43 60.5
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.9e-07 58.2 43 60.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.9e-07 58.2 48 56.2
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.5e-07 57.8 46 56.5
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.5e-07 57.8 46 56.5
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 2.5e-07 57.8 43 60.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 2.5e-07 57.8 44 63.6
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.5e-07 57.8 44 63.6
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.5e-07 57.8 47 57.4
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 3.3e-07 57.4 44 59.1
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.3e-07 57.4 44 59.1
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 3.3e-07 57.4 42 61.9
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 4.3e-07 57.0 43 60.5
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 4.3e-07 57.0 44 56.8
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 5.7e-07 56.6 43 60.5
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 5.7e-07 56.6 44 59.1
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 5.7e-07 56.6 43 62.8
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 7.4e-07 56.2 46 56.5
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 7.4e-07 56.2 42 61.9
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 9.7e-07 55.8 44 56.8
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 9.7e-07 55.8 43 60.5
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 9.7e-07 55.8 42 61.9
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.3e-06 55.5 42 61.9
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 1.3e-06 55.5 43 58.1
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.6e-06 55.1 44 59.1
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 2.2e-06 54.7 44 54.5
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 3.7e-06 53.9 43 55.8
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 3.7e-06 53.9 44 56.8
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 3.7e-06 53.9 43 55.8
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-06 53.5 26 96.2
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 4.8e-06 53.5 47 53.2
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 4.8e-06 53.5 44 54.5
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 6.3e-06 53.1 44 56.8
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 6.3e-06 53.1 26 96.2
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 6.3e-06 53.1 42 57.1
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 8.2e-06 52.8 47 51.1
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 8.2e-06 52.8 48 52.1
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 8.2e-06 52.8 43 53.5


User provided reference genes

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