Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.6e-197 692.6 356 100.0
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 4.7e-197 691.0 356 99.4
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 4.4e-195 684.5 356 98.3
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 9.1e-193 676.8 356 97.5
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 7.7e-192 673.7 356 96.9
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 2.2e-170 602.4 356 87.6
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 7.1e-169 597.4 356 88.5
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 3.5e-168 595.1 356 87.1
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 4.6e-168 594.7 356 86.5
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 6.0e-168 594.3 356 86.5
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 7.8e-168 594.0 356 86.2
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 3.9e-167 591.7 356 86.5
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 5.1e-167 591.3 356 87.6
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 8.6e-167 590.5 356 86.2
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 5.8e-163 577.8 356 84.8
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 9.9e-163 577.0 356 84.6
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 1.6e-157 559.7 356 82.6
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.8e-127 459.9 356 68.3
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 5.3e-124 448.4 356 67.7
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.3e-117 427.2 353 65.7
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 3.9e-111 405.6 355 63.4
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 6.7e-111 404.8 391 61.1
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 4.1e-108 395.6 355 61.1
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 6.9e-108 394.8 356 62.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 1.2e-107 394.0 371 60.4
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.0e-107 393.3 357 61.3
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.4e-107 392.5 355 61.7
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 4.5e-107 392.1 331 64.4
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 5.0e-106 388.7 361 60.4
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 8.5e-106 387.9 355 61.1
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.1e-105 387.5 375 58.4
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 1.1e-105 387.5 381 58.8
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.4e-105 387.1 385 60.0
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 4.2e-105 385.6 376 58.5
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.6e-104 383.6 371 58.0
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 3.6e-104 382.5 362 59.9
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 6.1e-104 381.7 374 59.4
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 6.1e-104 381.7 382 58.1
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.0e-103 380.9 372 60.5
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.4e-103 380.6 372 60.5
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.4e-103 380.6 362 60.2
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.4e-103 380.6 377 57.0
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 2.3e-103 379.8 365 59.2
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.3e-103 379.8 386 57.3
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.0e-103 379.4 375 58.9
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 3.9e-103 379.0 378 58.5
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.9e-103 379.0 380 57.9
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 6.7e-103 378.3 379 58.0
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.1e-102 377.5 382 58.1
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.1e-102 377.5 375 59.5
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 2.0e-102 376.7 379 57.3
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.6e-102 376.3 382 56.5
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.3e-102 375.9 385 57.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 4.4e-102 375.6 378 57.7
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 5.7e-102 375.2 383 59.3
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.7e-102 374.4 378 58.5
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 9.7e-102 374.4 383 57.2
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 8.2e-101 371.3 380 56.8
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.1e-100 370.9 384 55.5
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 2.4e-100 369.8 387 56.1
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.0e-100 368.2 396 56.6
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 9.1e-100 367.9 371 58.5
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 9.1e-100 367.9 396 55.6
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 2.0e-99 366.7 370 56.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.0e-99 366.7 386 55.4
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.6e-99 366.3 387 56.1
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 3.5e-99 365.9 388 56.2
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 3.5e-99 365.9 390 55.6
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.5e-99 365.5 387 54.5
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 4.5e-99 365.5 353 59.8
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 5.9e-99 365.2 393 56.5
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.7e-99 364.8 392 56.1
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.0e-98 364.4 387 55.8
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.9e-98 362.8 387 53.7
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 3.8e-98 362.5 384 56.0
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 5.0e-98 362.1 363 55.9
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.1e-97 360.9 388 58.5
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 7.2e-97 358.2 355 58.3
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 1.2e-96 357.5 388 54.1
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.6e-96 357.1 359 58.2
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.7e-96 356.3 331 60.4
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.7e-96 355.5 375 57.3
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.7e-96 355.5 374 57.2
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 1.4e-95 354.0 353 58.1
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 3.0e-95 352.8 356 57.0
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 4.0e-95 352.4 357 58.3
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 3.3e-94 349.4 377 56.0
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.8e-93 345.5 372 56.7
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.8e-93 345.5 372 56.5
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 6.3e-93 345.1 307 60.9
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.4e-92 344.0 380 53.2
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.8e-92 343.6 355 58.0
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 4.1e-92 342.4 377 52.5
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.7e-91 339.7 353 57.5
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 3.5e-91 339.3 373 54.2
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.5e-91 339.0 388 52.6
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 4.5e-91 339.0 347 57.1
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 2.5e-89 333.2 388 52.3
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.2e-89 332.4 375 54.7
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 2.7e-88 329.7 386 52.1
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.2e-86 324.3 312 58.7
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 2.6e-86 323.2 394 51.5
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 6.3e-85 318.5 394 51.0
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.1e-84 317.8 364 51.9
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.4e-84 317.4 368 50.8
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 1.9e-81 307.0 279 60.2
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.2e-81 305.8 362 48.6
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 2.1e-80 303.5 304 54.9
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.7e-80 303.1 331 52.3
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 6.8e-79 298.5 396 46.0
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 4.4e-78 295.8 354 53.4
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 5.4e-76 288.9 328 52.7
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.3e-74 284.3 267 60.3
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 3.7e-69 266.2 281 54.8
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.8e-67 258.5 263 54.8
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 7.8e-67 258.5 332 51.5
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 7.8e-67 258.5 332 51.5
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.4e-63 247.7 172 71.5
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 5.8e-62 242.3 444 36.0
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.4e-60 237.7 274 53.3
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.2e-60 236.5 274 52.9
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 2.1e-48 197.2 204 54.4
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 6.0e-43 179.1 315 38.4
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.1e-39 168.3 185 53.0
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.4e-39 167.2 193 52.3
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.0e-30 137.5 285 34.0
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.2e-29 134.0 163 50.3
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 1.4e-28 131.3 359 33.1
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 9.3e-28 128.6 83 71.1
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 3.6e-24 116.7 129 48.1
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.4e-23 114.0 88 68.2
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 2.0e-22 110.9 151 51.0
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.7e-18 95.9 140 49.3
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 8.7e-18 95.5 59 86.4
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.9e-17 94.4 119 42.9
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 1.4e-15 88.2 88 52.3
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.6e-11 74.7 184 30.4
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.1e-09 68.6 50 62.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.9e-09 67.8 279 28.3
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.5e-09 67.4 53 60.4
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 4.5e-06 56.6 80 50.0
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 5.9e-06 56.2 165 27.3


User provided reference genes

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