Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 3.6e-115 418.3 216 100.0
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 2.5e-113 412.1 216 98.6
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 1.3e-109 399.8 221 96.4
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 2.1e-107 392.5 225 94.2
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 8.2e-96 354.0 228 84.6
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 2.4e-95 352.4 228 83.8
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 2.0e-94 349.4 228 83.3
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 8.5e-93 344.0 228 82.0
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 4.7e-91 338.2 229 82.1
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 1.7e-88 329.7 221 82.4
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 9.4e-84 313.9 231 74.0
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 1.8e-74 283.1 223 68.2
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 2.0e-73 279.6 228 66.2
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 4.4e-73 278.5 225 63.6
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.9e-72 275.8 225 62.7
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 3.7e-72 275.4 225 64.9
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 3.2e-71 272.3 219 63.9
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 3.2e-71 272.3 228 62.3
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 9.2e-71 270.8 231 63.2
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 9.2e-71 270.8 220 61.8
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 3.5e-70 268.9 226 62.8
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 3.5e-70 268.9 224 62.1
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 5.9e-70 268.1 226 61.1
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 1.0e-69 267.3 233 61.4
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.7e-69 266.5 219 63.0
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 2.3e-69 266.2 234 59.4
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 3.9e-69 265.4 231 59.7
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 5.0e-69 265.0 225 63.1
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 1.5e-68 263.5 225 62.2
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 1.9e-68 263.1 224 62.5
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.9e-68 263.1 231 60.2
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 3.3e-68 262.3 230 58.7
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 3.3e-68 262.3 230 61.7
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 7.3e-68 261.2 224 60.3
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.6e-67 260.0 230 58.3
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 2.1e-67 259.6 220 65.0
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 2.8e-67 259.2 233 60.5
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 2.8e-67 259.2 220 63.2
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 3.6e-67 258.8 231 61.0
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 4.7e-67 258.5 213 63.8
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.0e-66 257.3 231 60.2
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.4e-66 256.9 223 60.5
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 1.4e-66 256.9 223 60.5
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.8e-66 256.5 231 60.2
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 3.1e-66 255.8 231 58.4
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 8.9e-66 254.2 227 63.0
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 1.5e-65 253.4 227 59.9
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.5e-65 253.4 233 58.8
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 3.4e-65 252.3 217 60.4
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 3.4e-65 252.3 219 59.4
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 5.8e-65 251.5 228 58.8
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 9.8e-65 250.8 233 58.4
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 1.3e-64 250.4 230 57.0
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 2.9e-64 249.2 220 59.1
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 4.9e-64 248.4 229 58.1
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 4.9e-64 248.4 220 57.7
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 4.9e-64 248.4 224 58.9
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 6.4e-64 248.1 233 56.2
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 6.4e-64 248.1 227 57.3
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.1e-63 247.3 218 62.8
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 1.1e-63 247.3 231 57.6
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 1.1e-63 247.3 213 62.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.1e-63 247.3 221 59.3
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 1.4e-63 246.9 210 62.9
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.9e-63 246.5 226 59.7
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 3.2e-63 245.7 217 58.5
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 4.1e-63 245.4 218 61.0
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 4.1e-63 245.4 224 59.4
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.6e-62 243.4 226 61.1
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 2.7e-62 242.7 232 57.8
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 3.5e-62 242.3 228 59.6
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 4.6e-62 241.9 224 57.6
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.3e-61 240.4 224 58.0
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.3e-61 240.4 216 55.1
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 3.9e-61 238.8 216 55.1
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.8e-59 232.6 220 55.0
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 8.1e-59 231.1 228 55.7
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.1e-58 230.7 219 55.7
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.0e-58 228.8 219 57.1
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 5.2e-58 228.4 230 55.7
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 3.4e-57 225.7 227 52.4
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 4.4e-57 225.3 228 55.3
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 7.5e-57 224.6 216 58.3
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 9.8e-57 224.2 221 52.9
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 3.7e-56 222.2 209 57.4
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.4e-55 220.3 224 57.6
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.4e-55 220.3 199 58.3
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.4e-55 219.5 239 54.0
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 3.2e-55 219.2 283 48.1
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 5.4e-55 218.4 227 55.5
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.7e-54 216.1 225 52.9
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 4.6e-54 215.3 242 50.4
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 4.6e-54 215.3 247 51.8
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 7.8e-54 214.5 211 56.4
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 3.0e-53 212.6 209 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 8.6e-53 211.1 224 52.7
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.5e-52 209.5 221 53.4
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 5.6e-52 208.4 232 49.1
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 7.3e-52 208.0 216 55.1
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 2.8e-51 206.1 228 50.0
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 4.4e-49 198.7 216 48.6
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 1.7e-48 196.8 211 56.4
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.2e-46 190.7 221 50.7
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 2.1e-43 179.9 206 50.0
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 2.2e-40 169.9 165 54.5
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.2e-39 165.6 166 56.0
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 7.1e-39 164.9 206 49.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 3.0e-37 159.5 159 54.1
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 2.1e-35 153.3 106 73.6
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 5.3e-34 148.7 157 53.5
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-32 142.1 259 35.1
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 2.1e-30 136.7 209 39.7
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.0e-30 135.2 176 45.5
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 8.7e-29 131.3 99 67.7
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.6e-28 127.9 116 58.6
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 1.3e-27 127.5 271 32.1
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 3.6e-27 125.9 80 75.0
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 9.0e-26 121.3 101 63.4
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 2.6e-25 119.8 91 64.8
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 1.9e-20 103.6 198 36.4
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 7.4e-20 101.7 155 43.9
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 7.4e-20 101.7 155 43.9
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.4e-18 97.4 74 68.9
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 1.7e-16 90.5 63 68.3
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.7e-16 90.5 83 54.2
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 2.9e-16 89.7 82 53.7
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 4.9e-16 89.0 83 53.0
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-14 84.3 83 50.6
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.9e-12 77.0 57 64.9
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 2.8e-11 73.2 48 72.9
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 6.3e-11 72.0 77 46.8
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 4.5e-09 65.9 85 48.2
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 9.3e-07 58.2 46 63.0


User provided reference genes

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