Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-85 318.5 165 100.0
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-83 313.2 165 98.2
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.2e-83 313.2 165 98.2
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 8.8e-82 307.0 161 98.1
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 8.8e-82 307.0 161 98.1
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-72 275.0 159 90.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.0e-62 242.7 163 77.9
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 4.6e-62 241.5 163 77.3
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 5.0e-61 238.0 159 80.5
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 4.3e-60 235.0 163 76.7
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.4e-57 225.3 161 75.2
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 6.4e-56 221.1 156 78.8
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-29 134.0 108 71.3
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.3e-27 127.1 169 47.9
C03p14810 Brassica napus HOM05D004507 ORTHO05D004874 8.4e-24 114.4 94 69.1
BolC3t13923H Brassica oleracea HOM05D004507 ORTHO05D004874 8.4e-24 114.4 94 69.1
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.4e-23 113.6 169 43.8
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 5.4e-23 111.7 175 42.3
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 6.7e-21 104.8 194 35.6
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 6.7e-21 104.8 176 43.2
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.1e-20 104.0 180 40.6
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-20 104.0 184 38.6
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.5e-20 103.6 160 43.1
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.5e-20 103.6 179 41.3
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.9e-20 103.2 160 43.1
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.5e-20 102.8 171 39.8
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 3.3e-20 102.4 190 38.4
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 4.3e-20 102.1 179 41.3
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 4.3e-20 102.1 179 41.9
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.3e-20 102.1 179 40.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.1e-19 99.8 193 38.9
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.8e-19 99.4 186 39.2
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.8e-19 99.4 168 38.7
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.8e-19 99.4 180 39.4
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 2.8e-19 99.4 179 40.2
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.6e-19 99.0 160 42.5
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.8e-19 98.6 185 37.3
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 8.1e-19 97.8 178 37.6
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.1e-18 97.4 186 38.7
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.1e-18 97.4 182 41.8
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.1e-18 97.4 182 41.8
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.1e-18 97.4 182 38.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.8e-18 96.7 186 38.7
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.8e-18 96.7 183 38.8
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.4e-18 96.3 182 39.0
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.4e-18 96.3 182 37.9
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 2.4e-18 96.3 168 41.7
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 3.1e-18 95.9 176 40.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 3.1e-18 95.9 171 39.8
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 4.0e-18 95.5 163 40.5
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 4.0e-18 95.5 185 39.5
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.0e-18 95.5 177 42.4
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 4.0e-18 95.5 160 39.4
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 4.0e-18 95.5 181 38.7
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.3e-18 95.1 176 38.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.9e-18 94.7 171 35.7
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 6.9e-18 94.7 172 37.2
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 6.9e-18 94.7 187 40.1
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 6.9e-18 94.7 183 40.4
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 9.0e-18 94.4 183 34.4
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 9.0e-18 94.4 183 38.8
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.2e-17 94.0 183 33.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-17 94.0 175 40.0
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.0e-17 93.2 186 38.2
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.0e-17 93.2 176 38.6
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 2.6e-17 92.8 192 35.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.6e-17 92.8 180 37.2
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.6e-17 92.8 177 37.9
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 3.4e-17 92.4 168 36.9
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 3.4e-17 92.4 184 39.1
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.4e-17 92.4 181 37.0
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.4e-17 92.4 191 34.6
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 4.5e-17 92.0 171 34.5
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 4.5e-17 92.0 181 39.2
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 5.8e-17 91.7 191 35.6
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 5.8e-17 91.7 171 35.7
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 5.8e-17 91.7 160 37.5
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 7.6e-17 91.3 185 36.2
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 9.9e-17 90.9 179 38.0
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.3e-16 90.5 193 39.4
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.3e-16 90.5 207 34.3
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.3e-16 90.5 170 38.2
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 1.7e-16 90.1 186 37.1
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 2.2e-16 89.7 171 36.3
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 2.2e-16 89.7 171 36.3
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.2e-16 89.7 177 37.3
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.2e-16 89.7 174 37.4
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 4.9e-16 88.6 178 34.3
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 4.9e-16 88.6 191 36.1
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 4.9e-16 88.6 172 39.5
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.9e-16 88.6 176 39.8
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.4e-16 88.2 182 37.4
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 6.4e-16 88.2 169 36.7
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 8.4e-16 87.8 165 38.2
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.1e-15 87.4 143 40.6
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.1e-15 87.4 170 35.3
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 1.9e-15 86.7 171 35.1
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 1.9e-15 86.7 171 35.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.9e-15 86.7 183 35.5
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.4e-15 86.3 165 37.6
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 2.4e-15 86.3 171 35.1
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 2.4e-15 86.3 171 35.1
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 2.4e-15 86.3 187 35.3
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.4e-15 86.3 175 38.3
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 3.2e-15 85.9 175 37.7
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-15 85.5 171 35.1
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-15 85.5 171 33.9
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 4.2e-15 85.5 171 35.1
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 4.2e-15 85.5 171 34.5
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.5e-15 85.1 143 39.2
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 5.5e-15 85.1 178 39.9
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 7.1e-15 84.7 173 37.0
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 1.2e-14 84.0 161 37.9
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.6e-14 83.6 177 36.7
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.6e-14 83.6 175 36.0
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.1e-14 83.2 191 33.0
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 2.7e-14 82.8 173 37.0
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 2.7e-14 82.8 173 37.0
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.7e-14 82.8 166 39.8
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 3.5e-14 82.4 196 35.2
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.6e-14 82.0 177 37.3
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 6.0e-14 81.6 174 35.6
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.3e-13 80.5 185 33.5
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.3e-13 79.7 132 41.7
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 5.1e-13 78.6 180 35.6
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.1e-13 78.6 184 35.3
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 6.7e-13 78.2 160 39.4
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.1e-12 77.4 181 32.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.1e-12 77.4 180 35.6
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.3e-12 75.9 163 29.4
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 5.6e-12 75.1 191 31.9
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 9.6e-12 74.3 164 37.8
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-11 73.6 157 35.7
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.6e-11 73.6 159 37.1
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 4.8e-11 72.0 174 32.8
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.4e-10 69.7 166 31.3
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 4.0e-10 68.9 152 36.2
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 4.0e-10 68.9 150 34.7
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 9.0e-10 67.8 149 38.3
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.0e-08 64.3 158 34.2
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.3e-08 63.9 175 33.7
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.3e-08 63.9 171 31.0
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.9e-08 62.8 151 32.5
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 3.2e-07 59.3 114 31.6
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 3.2e-07 59.3 58 55.2
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 5.5e-07 58.5 61 50.8
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 1.2e-06 57.4 133 33.1
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.6e-06 57.0 46 65.2
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.1e-06 56.6 129 31.8
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.5e-06 55.8 149 32.9
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 4.6e-06 55.5 191 30.4
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 7.9e-06 54.7 46 47.8


User provided reference genes

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