Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 1.0e-30 136.0 63 100.0
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 2.3e-30 134.8 63 98.4
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 1.5e-18 95.5 59 78.0
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 2.0e-18 95.1 59 76.3
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 2.6e-18 94.7 59 76.3
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 2.6e-18 94.7 59 76.3
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 4.5e-18 94.0 59 74.6
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 4.5e-18 94.0 59 74.6
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 4.5e-18 94.0 59 74.6
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 1.3e-17 92.4 59 74.6
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 3.8e-17 90.9 59 72.9
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 3.8e-17 90.9 59 72.9
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.1e-16 89.4 59 71.2
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.4e-16 89.0 59 71.2
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 8.7e-14 79.7 59 66.1
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 1.9e-13 78.6 59 64.4
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 5.7e-13 77.0 61 60.7
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 9.7e-13 76.3 59 57.6
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 9.7e-13 76.3 59 57.6
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.2e-12 75.1 49 67.3
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 2.2e-12 75.1 53 62.3
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 2.8e-12 74.7 50 62.0
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 2.8e-12 74.7 53 62.3
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 3.7e-12 74.3 44 68.2
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 4.8e-12 73.9 53 62.3
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 4.8e-12 73.9 48 64.6
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 4.8e-12 73.9 48 64.6
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.8e-12 73.9 51 60.8
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 4.8e-12 73.9 51 62.7
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 6.3e-12 73.6 53 60.4
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 8.2e-12 73.2 61 55.7
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 8.2e-12 73.2 45 66.7
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 8.2e-12 73.2 59 54.2
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.8e-11 72.0 48 64.6
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 1.8e-11 72.0 59 52.5
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.8e-11 72.0 59 50.8
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.8e-11 72.0 59 50.8
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.4e-11 71.6 54 55.6
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 2.4e-11 71.6 55 52.7
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 2.4e-11 71.6 54 55.6
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 2.4e-11 71.6 54 55.6
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 3.1e-11 71.2 59 54.2
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 9.1e-11 69.7 53 56.6
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.5e-10 68.9 59 52.5
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 1.5e-10 68.9 59 52.5
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 2.6e-10 68.2 51 58.8
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 3.4e-10 67.8 53 52.8
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.4e-10 67.8 53 52.8
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.4e-10 67.8 53 52.8
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 3.4e-10 67.8 40 65.0
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 3.4e-10 67.8 54 55.6
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 3.4e-10 67.8 39 74.4
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 3.4e-10 67.8 39 74.4
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 3.4e-10 67.8 44 63.6
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 3.4e-10 67.8 45 60.0
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 4.5e-10 67.4 50 60.0
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 4.5e-10 67.4 45 62.2
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 5.9e-10 67.0 59 52.5
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 5.9e-10 67.0 54 53.7
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 7.7e-10 66.6 45 60.0
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 7.7e-10 66.6 44 59.1
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 7.7e-10 66.6 53 56.6
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 7.7e-10 66.6 51 60.8
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.0e-09 66.2 45 60.0
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 1.0e-09 66.2 49 59.2
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 1.0e-09 66.2 53 50.9
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.3e-09 65.9 46 58.7
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.3e-09 65.9 45 60.0
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.7e-09 65.5 39 64.1
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 1.7e-09 65.5 39 64.1
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 2.2e-09 65.1 61 52.5
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 5.0e-09 63.9 42 64.3
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 5.0e-09 63.9 61 45.9
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 5.0e-09 63.9 45 60.0
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 6.5e-09 63.5 53 52.8
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 6.5e-09 63.5 45 60.0
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 8.5e-09 63.2 45 62.2
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 8.5e-09 63.2 40 62.5
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 1.1e-08 62.8 45 55.6
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 1.4e-08 62.4 45 60.0
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 1.4e-08 62.4 45 60.0
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.4e-08 62.4 40 62.5
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 1.9e-08 62.0 45 53.3
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 2.5e-08 61.6 41 68.3
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 3.2e-08 61.2 42 57.1
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 4.2e-08 60.8 45 57.8
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 5.5e-08 60.5 43 55.8
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 7.2e-08 60.1 45 55.6
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 1.6e-07 58.9 45 55.6
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 1.6e-07 58.9 47 53.2
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 7.9e-07 56.6 35 60.0
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 2.3e-06 55.1 38 52.6
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 3.0e-06 54.7 44 52.3


User provided reference genes

Program Settings